RNA id: TU4331


Basic Information

Item Value
RNA id TU4331
length 1431
RNA type TUCP
GC content 0.39
exon number 2
gene id G3351
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4439966 ~ 4441908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTTTTGCATTAACAGTCTGTCTTTTATTCGTCTCATCATCTGATGAGTTAAATAGAATTACAGGCTAATGACTGCACTGTGCCAGCGTACAACCAACacgtactactactactacatgggAATTGACAACAAAAGCTATAAAGGTtattctgttttttaaatcaggCTTGATTCTCATTTCTCCGATATCGATTATCACCTTATGACTGGTTTAATCATTGAAAATTCAAATTCAATACAAATattatataataaaaaaaaaaaaacagaaataatgaATGAAAAAATGGTTCTAATGGTTTTAATGCTATAACCTACATGAACACATACTGCagttactgagttacagaggaaggATTCTATGTTGTTAGACAAACCGAGACAACAGTaatggttagggtgtgtgtgtgtgtgtgtgtgtgtgtgtctctatcttCACATTGTGTTGATTTGACAAACCGAGACAACAGCaatggttagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctatcttCACATTGTGTTGATTTGACAAACCGAGACAACAACAGTAACAGACTCAGCAGCACCGTGTGGCCTGTCTGGCCGGAGCAAATCCTTTAAATAATCTGACAACAGCTTCCAGCACAGCCAGAAACAACACATTCACTGTTTGTTGTTTGGGGGGGTTACAGATTACTgaaatccagtgtgtgtgtggtgttgggcgTGTGTCTGCCTGTCATTGTGTGTCTTAcgtatgtaacggatgtgaaacggctagcttagttagcggtgggcgctaaatagcgtttcaatcagtgacgtcacttgctctgagaccttgaagtagtagttccccttgctctgcagcggcttttgtggagcgatgggtaaacgatgcttcgagggtgactgttgatgtgtgcagaaggtccctggttcgcgcccgggtatgggcgaggggacggtctaaacttatactgttacacgtacctaagtgtgtatgtatgtgcatgtgcgtgtgagattgtgtgtgtacatgtgtgtttacatgtgtacATTCTGCAGAAACCAGTCTGTTGATTCCCAGTGACATACATACTAAGGACTGTCTGTCCCAGAATGCCATACTGTcattctccccatccctctccagGGGTCAGGGGCCACTGGTTAGCGTACACCCCATTATCTCAGTATCTGGTTGACGTAGGCctgcctcctcctcatctcctggtCCAACTGCTCCTTCAGTGTCAGCACCTTggggaggggggcagggggagacacagagacagagaccgagagacagagagggacagagacagagagggacagacacagagacagagggggacagacacAGAGGGGAACAGACACAGAGGGGTACAGACACAGAgggggacagacacagagagggacagacacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4190 lncRNA upstream 4482 4357439 ~ 4435484 (+) True G3232
TU4166 lncRNA upstream 149107 4289767 ~ 4290859 (+) True G3211
TU4160 lncRNA upstream 157550 4281407 ~ 4282416 (+) True G3205
TU4159 lncRNA upstream 160335 4279406 ~ 4279631 (+) True G3204
TU4157 lncRNA upstream 162526 4277168 ~ 4277440 (+) True G3202
TU4335 lncRNA downstream 2973 4444881 ~ 4453583 (+) True G3354
TU4338 lncRNA downstream 8952 4450860 ~ 4451777 (+) True G3357
TU4364 lncRNA downstream 40815 4482723 ~ 4489920 (+) False G3375
TU4368 lncRNA downstream 40815 4482723 ~ 4487440 (+) True G3375
TU4372 lncRNA downstream 48084 4489992 ~ 4498191 (+) True G3377
XM_021616297.2 mRNA upstream 586957 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 592007 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 592272 3847623 ~ 3847694 (+) True trnap-cgg
XR_005052490.1 mRNA upstream 614101 3823136 ~ 3825865 (+) False LOC118965227
XM_036981292.1 mRNA upstream 815384 3602663 ~ 3624582 (+) True bcl6aa
XM_036983882.1 mRNA downstream 506819 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA downstream 507483 4949391 ~ 4957086 (+) True agxta
XM_036984367.1 mRNA downstream 1222263 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 1222263 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 1222263 5664171 ~ 5767693 (+) False LOC110526525
TU4195 other upstream 40522 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 261893 4175323 ~ 4178073 (+) True G3176
TU3203 other upstream 936385 3503269 ~ 3503581 (+) True G2464
TU3048 other upstream 1223732 3214697 ~ 3216234 (+) True G2343
TU2640 other upstream 1794797 2644335 ~ 2645169 (+) True G2016
TU4683 other downstream 412613 4854521 ~ 4856248 (+) True G3596
TU4684 other downstream 414617 4856525 ~ 4857065 (+) True G3597
TU6645 other downstream 2075574 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 2369086 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 3283138 7725046 ~ 7725609 (+) True G6434

Expression Profile