RNA id: TU4564


Basic Information

Item Value
RNA id TU4564
length 497
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G3522
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4695588 ~ 4700054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACTGCAACTATTGGAGGAAATCTGAATTTGGTTTACTGACAATGAATACTTTCGTTCtatgtgtatttattttatgCATTTTCgtatttattttttcaaataaAGTGCCCTAAATAAAAGCCAACCGACCTGTGACATAAACGTCATTATTCAAAGAGACCACAGAGTATCCGTACTTGTTGTGGTTGGGGAAGACTGGCAGCTCATACCACtgtTGTCTTAGGGTTGTAGAAGCCACAGTTTCCGGGCAGCAGCCTGGGGTCTctgtcttcatcatcatcatcttcgtCATCTGAGTCGTCCAGCGAGCGTCCTCCCATCACGAATAACACCTCCTCCAGGTTGGGTTGGGGACTCGGGCTGCCACTCTGGACCACGTCTCCTGGCTTCACGTCCATTTTCTACACAAAGACGGTGATTTGGAAATGTTGGGAAATATGGAAGTTCTCTCTGCCCTGATAAAACTTAAGGTtccggtttcccagacacagatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4561 lncRNA upstream 230 4692248 ~ 4695358 (+) False G3521
TU4563 lncRNA upstream 230 4692248 ~ 4695358 (+) True G3521
TU4418 lncRNA upstream 68788 4588656 ~ 4626800 (+) True G3416
TU4430 lncRNA upstream 82809 4611590 ~ 4612779 (+) True G3427
TU4419 lncRNA upstream 101999 4592685 ~ 4593589 (+) True G3417
TU4618 lncRNA downstream 48304 4748358 ~ 4816025 (+) True G3540
TU4622 lncRNA downstream 62195 4762249 ~ 4762604 (+) True G3544
TU4647 lncRNA downstream 106967 4807021 ~ 4807264 (+) True G3569
TU4655 lncRNA downstream 114972 4815026 ~ 4820273 (+) False G3575
TU4656 lncRNA downstream 116623 4816677 ~ 4820692 (+) True G3575
XM_021616297.2 mRNA upstream 842579 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 847629 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 847894 3847623 ~ 3847694 (+) True trnap-cgg
XR_005052490.1 mRNA upstream 869723 3823136 ~ 3825865 (+) False LOC118965227
XM_036981292.1 mRNA upstream 1071006 3602663 ~ 3624582 (+) True bcl6aa
XM_036983882.1 mRNA downstream 248673 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA downstream 249337 4949391 ~ 4957086 (+) True agxta
XM_036984367.1 mRNA downstream 964117 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 964117 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 964117 5664171 ~ 5767693 (+) False LOC110526525
TU4331 other upstream 253680 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 296144 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 517515 4175323 ~ 4178073 (+) True G3176
TU3203 other upstream 1192007 3503269 ~ 3503581 (+) True G2464
TU3048 other upstream 1479354 3214697 ~ 3216234 (+) True G2343
TU4683 other downstream 154467 4854521 ~ 4856248 (+) True G3596
TU4684 other downstream 156471 4856525 ~ 4857065 (+) True G3597
TU6645 other downstream 1817428 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 2110940 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 3024992 7725046 ~ 7725609 (+) True G6434

Expression Profile