RNA id: TU5251


Basic Information

Item Value
RNA id TU5251
length 287
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G4033
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5253928 ~ 5254214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcaaaaaacagttttcaaccagcgattgagttgtgagactctgctgtagagctcatcactccccctaactgggagggggccagagacaattactcgatgccgacacatctttctagctgatttacacgcagaagctaagttgcgcttggtgatctctgactgtttcatcctaacatcgttggtgccgacgtggataacaatatctctatactctctacactcgccagttttagctttagccagcaccatcttcagattagccttaacgtcgttAGCCCTgcccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5250 lncRNA upstream 132 5253457 ~ 5253796 (+) True G4032
TU5244 lncRNA upstream 7776 5245905 ~ 5246152 (+) True G4026
TU5243 lncRNA upstream 8744 5244815 ~ 5245184 (+) True G4025
TU5179 lncRNA upstream 63293 5190430 ~ 5190635 (+) True G3972
TU5171 lncRNA upstream 68107 5185439 ~ 5185821 (+) True G3964
TU5257 lncRNA downstream 9320 5263534 ~ 5263885 (+) True G4039
TU5276 lncRNA downstream 38153 5292367 ~ 5292590 (+) True G4057
TU5281 lncRNA downstream 46632 5300846 ~ 5301088 (+) True G4062
TU5285 lncRNA downstream 56341 5310555 ~ 5310794 (+) True G4065
TU5286 lncRNA downstream 59317 5313531 ~ 5313758 (+) True G4066
XM_036983882.1 mRNA upstream 296842 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA upstream 296842 4949391 ~ 4957086 (+) True agxta
XM_021616297.2 mRNA upstream 1400919 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 1405969 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 1406234 3847623 ~ 3847694 (+) True trnap-cgg
XM_036984367.1 mRNA downstream 409957 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 409957 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 409957 5664171 ~ 5767693 (+) False LOC110526525
XM_036984485.1 mRNA downstream 409958 5664172 ~ 5767693 (+) False LOC110526525
XM_036984495.1 mRNA downstream 409958 5664172 ~ 5767693 (+) False LOC110526525
TU4684 other upstream 396863 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 397680 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 812020 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 854484 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 1075855 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 1263268 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 1556780 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 2470832 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 2631177 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 2782403 8036617 ~ 8037154 (+) True G6807

Expression Profile