RNA id: TU5276


Basic Information

Item Value
RNA id TU5276
length 224
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G4057
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5292367 ~ 5292590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATCAAAGGGGCATTTTTCgtgccattattagttacattgtttagtTTGAACATACAGACAGGCACTAGGAACACCGGAACGTTTACCTAGTCAGctccattattagttacattgtttagtTTGAACGTACAGACAGGCACTAAGAACACCGGAACGTTTACCTAGTCAActccattattagttacattgtttagtTTGAACGTACAGACAGGCACTAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5257 lncRNA upstream 28482 5263534 ~ 5263885 (+) True G4039
TU5251 lncRNA upstream 38153 5253928 ~ 5254214 (+) True G4033
TU5250 lncRNA upstream 38571 5253457 ~ 5253796 (+) True G4032
TU5244 lncRNA upstream 46215 5245905 ~ 5246152 (+) True G4026
TU5243 lncRNA upstream 47183 5244815 ~ 5245184 (+) True G4025
TU5281 lncRNA downstream 8256 5300846 ~ 5301088 (+) True G4062
TU5285 lncRNA downstream 17965 5310555 ~ 5310794 (+) True G4065
TU5286 lncRNA downstream 20941 5313531 ~ 5313758 (+) True G4066
TU5341 lncRNA downstream 36680 5329270 ~ 5329629 (+) True G4119
TU5352 lncRNA downstream 57880 5350470 ~ 5351002 (+) False G4129
XM_036983882.1 mRNA upstream 335281 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA upstream 335281 4949391 ~ 4957086 (+) True agxta
XM_021616297.2 mRNA upstream 1439358 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 1444408 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 1444673 3847623 ~ 3847694 (+) True trnap-cgg
XM_036984367.1 mRNA downstream 371581 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 371581 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 371581 5664171 ~ 5767693 (+) False LOC110526525
XM_036984485.1 mRNA downstream 371582 5664172 ~ 5767693 (+) False LOC110526525
XM_036984495.1 mRNA downstream 371582 5664172 ~ 5767693 (+) False LOC110526525
TU4684 other upstream 435302 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 436119 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 850459 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 892923 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 1114294 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 1224892 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 1518404 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 2432456 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 2592801 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 2744027 8036617 ~ 8037154 (+) True G6807

Expression Profile