RNA id: TU5385


Basic Information

Item Value
RNA id TU5385
length 243
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G4150
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5374883 ~ 5375125 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacacagcccatctgtaaatagcccacccaaccaattaccacctacctcatccccatatttgtttttatttttctgctcttttgcacaccagtatttctacttaaaCATCCTcctctgcacatatatcactccagtgtaaatgtatcaattgtaattacttcgccaatATTGGCCTATACATTGCCTTACttccttacttaatttgcacacactgtatacagtgtttgtcacactgtcacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5377 lncRNA upstream 11111 5363414 ~ 5363772 (+) True G4142
TU5374 lncRNA upstream 14647 5359980 ~ 5360236 (+) True G4139
TU5352 lncRNA upstream 23881 5350470 ~ 5351002 (+) False G4129
TU5357 lncRNA upstream 23881 5350470 ~ 5351002 (+) True G4129
TU5341 lncRNA upstream 45254 5329270 ~ 5329629 (+) True G4119
TU5398 lncRNA downstream 16696 5391821 ~ 5392089 (+) True G4163
TU5428 lncRNA downstream 39332 5414457 ~ 5414731 (+) True G4190
TU5436 lncRNA downstream 44680 5419805 ~ 5420109 (+) True G4198
TU5448 lncRNA downstream 56213 5431338 ~ 5433302 (+) False G4209
TU5449 lncRNA downstream 56213 5431338 ~ 5435172 (+) False G4209
XM_036983882.1 mRNA upstream 417797 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA upstream 417797 4949391 ~ 4957086 (+) True agxta
XM_021616297.2 mRNA upstream 1521874 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 1526924 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 1527189 3847623 ~ 3847694 (+) True trnap-cgg
XM_036984367.1 mRNA downstream 289046 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 289046 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 289046 5664171 ~ 5767693 (+) False LOC110526525
XM_036984485.1 mRNA downstream 289047 5664172 ~ 5767693 (+) False LOC110526525
XM_036984495.1 mRNA downstream 289047 5664172 ~ 5767693 (+) False LOC110526525
TU4684 other upstream 517818 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 518635 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 932975 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 975439 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 1196810 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 1142357 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 1435869 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 2349921 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 2510266 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 2661492 8036617 ~ 8037154 (+) True G6807

Expression Profile