RNA id: TU6592


Basic Information

Item Value
RNA id TU6592
length 436
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G5226
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6467996 ~ 6468431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atggcataCTGTGTGCAGATGGGTGAGGAGAAAAtctgtttaatccattttgaattcaggctgtaacacaacaacatgtggaataaatcaaggggtatgaatactttttgaatgcacaGTGGGGTACAGAGAAAagtgtcattcagaaatcatggtAAACTctattactgcacacagagtgagtccatgcaacttattatgtgacttgttaaggacattactcctgaacttatagCACAAAAATATTACTTCTCACATTTTTTGGcacaaaatgtgtttacatccctgttagtgagcatttctcctttgccaagacaatccatccacctgacaggtgtggcatatcaagaatctgattaaacagcatgatcattgcacaggtgctAGGGGCCAATAAAAAGCTAACTCTAACATGcatagttttgtcacacaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6586 lncRNA upstream 13516 6454033 ~ 6454480 (+) True G5220
TU6577 lncRNA upstream 19263 6448481 ~ 6448733 (+) True G5212
TU6574 lncRNA upstream 23476 6444205 ~ 6444520 (+) True G5209
TU6572 lncRNA upstream 24806 6442905 ~ 6443190 (+) True G5207
TU6569 lncRNA upstream 29159 6436951 ~ 6438837 (+) True G5204
TU6594 lncRNA downstream 1844 6470275 ~ 6470596 (+) True G5228
TU6609 lncRNA downstream 12755 6481186 ~ 6481424 (+) True G5243
TU6612 lncRNA downstream 19514 6487945 ~ 6488435 (+) True G5246
TU6619 lncRNA downstream 27362 6495793 ~ 6496378 (+) True G5253
TU6621 lncRNA downstream 29990 6498421 ~ 6498721 (+) True G5255
XM_036984615.1 mRNA upstream 700303 5664172 ~ 5767693 (+) False LOC110526525
XR_005052837.1 mRNA downstream 90636 6559067 ~ 6651795 (+) False LOC110527749
XM_036985001.1 mRNA downstream 90637 6559068 ~ 6651795 (+) False LOC110527749
XR_005052830.1 mRNA downstream 90637 6559068 ~ 6651795 (+) False LOC110527749
XR_005052839.1 mRNA downstream 90638 6559069 ~ 6651795 (+) False LOC110527749
XM_021609413.2 mRNA downstream 215668 6684099 ~ 6700304 (+) True b3gnt7
TU4684 other upstream 1610931 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 1611748 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 2026088 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 2068552 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 2289923 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 49051 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 342563 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 1256615 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 1416960 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 1568186 8036617 ~ 8037154 (+) True G6807

Expression Profile