RNA id: TU6594


Basic Information

Item Value
RNA id TU6594
length 322
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G5228
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6470275 ~ 6470596 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTATAAATACACTACCTGACCAAAagatatgtggacacctgctcgtcgaacatctcattccaaaatcatggccattaatatggagttggtcccccctttgctgctataacagcctccattcttctgggaaggctatccactagatgttggaacatcgctGAGGGTACtcgcttccattcagccacaagacatTAGTGAGGtccggcactgatgttgggcgattaggcctggctcgcagtcagtgttccaattcatcccaaaggtgtttgatggagttgagatcagggctctgagCGGGCCAACCTTtcaacaccgatctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6592 lncRNA upstream 1844 6467996 ~ 6468431 (+) True G5226
TU6586 lncRNA upstream 15795 6454033 ~ 6454480 (+) True G5220
TU6577 lncRNA upstream 21542 6448481 ~ 6448733 (+) True G5212
TU6574 lncRNA upstream 25755 6444205 ~ 6444520 (+) True G5209
TU6572 lncRNA upstream 27085 6442905 ~ 6443190 (+) True G5207
TU6609 lncRNA downstream 10590 6481186 ~ 6481424 (+) True G5243
TU6612 lncRNA downstream 17349 6487945 ~ 6488435 (+) True G5246
TU6619 lncRNA downstream 25197 6495793 ~ 6496378 (+) True G5253
TU6621 lncRNA downstream 27825 6498421 ~ 6498721 (+) True G5255
TU6633 lncRNA downstream 35392 6505988 ~ 6506188 (+) True G5264
XM_036984615.1 mRNA upstream 702582 5664172 ~ 5767693 (+) False LOC110526525
XR_005052837.1 mRNA downstream 88471 6559067 ~ 6651795 (+) False LOC110527749
XM_036985001.1 mRNA downstream 88472 6559068 ~ 6651795 (+) False LOC110527749
XR_005052830.1 mRNA downstream 88472 6559068 ~ 6651795 (+) False LOC110527749
XR_005052839.1 mRNA downstream 88473 6559069 ~ 6651795 (+) False LOC110527749
XM_021609413.2 mRNA downstream 213503 6684099 ~ 6700304 (+) True b3gnt7
TU4684 other upstream 1613210 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 1614027 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 2028367 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 2070831 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 2292202 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 46886 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 340398 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 1254450 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 1414795 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 1566021 8036617 ~ 8037154 (+) True G6807

Expression Profile