RNA id: TU6612


Basic Information

Item Value
RNA id TU6612
length 407
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G5246
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6487945 ~ 6488435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCAGGGCtggacaggcctggctggtttctcaggactggacaggcctggctggtttctcaggaccGGACAGGCCTGGTTGGATTTTCAGGACTAGACAGGCCaggctggtttctcaggactagacgggcctggctggtttctcaggactagacaggcctggctggtttctcaggactagacaggcctggctggtttctcaggactagaCAGGCATGTCTGGTTTCTCAGTACTAGACAGGCGTGGCTGGTTTTCTCAGGACtagacaggcctggctggttcCTCAGGACTGGACAagcctggctggtttctcaggactagagaggcctggctggtttctcaggactagacaggcctggctggtttctcaagactggacaggcctggctggtttctcaggactggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6609 lncRNA upstream 6521 6481186 ~ 6481424 (+) True G5243
TU6594 lncRNA upstream 17349 6470275 ~ 6470596 (+) True G5228
TU6592 lncRNA upstream 19514 6467996 ~ 6468431 (+) True G5226
TU6586 lncRNA upstream 33465 6454033 ~ 6454480 (+) True G5220
TU6577 lncRNA upstream 39212 6448481 ~ 6448733 (+) True G5212
TU6619 lncRNA downstream 7358 6495793 ~ 6496378 (+) True G5253
TU6621 lncRNA downstream 9986 6498421 ~ 6498721 (+) True G5255
TU6633 lncRNA downstream 17553 6505988 ~ 6506188 (+) True G5264
TU6635 lncRNA downstream 21492 6509927 ~ 6510127 (+) True G5266
TU6642 lncRNA downstream 26671 6515106 ~ 6515743 (+) True G5273
XM_036984615.1 mRNA upstream 720252 5664172 ~ 5767693 (+) False LOC110526525
XR_005052837.1 mRNA downstream 70632 6559067 ~ 6651795 (+) False LOC110527749
XM_036985001.1 mRNA downstream 70633 6559068 ~ 6651795 (+) False LOC110527749
XR_005052830.1 mRNA downstream 70633 6559068 ~ 6651795 (+) False LOC110527749
XR_005052839.1 mRNA downstream 70634 6559069 ~ 6651795 (+) False LOC110527749
XM_021609413.2 mRNA downstream 195664 6684099 ~ 6700304 (+) True b3gnt7
TU4684 other upstream 1630880 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 1631697 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 2046037 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 2088501 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 2309872 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 29047 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 322559 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 1236611 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 1396956 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 1548182 8036617 ~ 8037154 (+) True G6807

Expression Profile