RNA id: TU6619


Basic Information

Item Value
RNA id TU6619
length 586
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G5253
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 6495793 ~ 6496378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaactactgaatataagatcagcgtcaactcaccatcagtacgaccaagaatatgtttttcgcgacgcggatcctgtgttctgccttacaaacaggacaacggagtggatcccatgcagcgacccaaaaaaacgactccgaaaaagagggaaacgaggcggtcttctggtcagactccggagacgggcacaccgtgcaccattccctagcattcttcttgccaatgtccagtctcttgacaacaaggttgatgaaatctgagcaagggtagcattccagagggacatcagagactgtaacgttctttgcttcacggaaacgtggcttactggagagacgctatccgaggcggtgcagccaacaggtttctccacgcatcgcgcagacagaaacaaacatctttctggtaagaagaggggcgggggcgtatgccttatgactaacgtgacatggtgtgatgaaagaaacatacaggaactcaaatccttctgttcaactgatttagaattcctcacaatcaaatgtagaccgcattatctaccaagagaattctcttcgattataatcacagccgtatatatccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6612 lncRNA upstream 7358 6487945 ~ 6488435 (+) True G5246
TU6609 lncRNA upstream 14369 6481186 ~ 6481424 (+) True G5243
TU6594 lncRNA upstream 25197 6470275 ~ 6470596 (+) True G5228
TU6592 lncRNA upstream 27362 6467996 ~ 6468431 (+) True G5226
TU6586 lncRNA upstream 41313 6454033 ~ 6454480 (+) True G5220
TU6621 lncRNA downstream 2043 6498421 ~ 6498721 (+) True G5255
TU6633 lncRNA downstream 9610 6505988 ~ 6506188 (+) True G5264
TU6635 lncRNA downstream 13549 6509927 ~ 6510127 (+) True G5266
TU6642 lncRNA downstream 18728 6515106 ~ 6515743 (+) True G5273
TU6688 lncRNA downstream 82226 6578604 ~ 6579773 (+) True G5304
XM_036984615.1 mRNA upstream 728100 5664172 ~ 5767693 (+) False LOC110526525
XR_005052837.1 mRNA downstream 62689 6559067 ~ 6651795 (+) False LOC110527749
XM_036985001.1 mRNA downstream 62690 6559068 ~ 6651795 (+) False LOC110527749
XR_005052830.1 mRNA downstream 62690 6559068 ~ 6651795 (+) False LOC110527749
XR_005052839.1 mRNA downstream 62691 6559069 ~ 6651795 (+) False LOC110527749
XM_021609413.2 mRNA downstream 187721 6684099 ~ 6700304 (+) True b3gnt7
TU4684 other upstream 1638728 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 1639545 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 2053885 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 2096349 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 2317720 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 21104 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 314616 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 1228668 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 1389013 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 1540239 8036617 ~ 8037154 (+) True G6807

Expression Profile