RNA id: TCONS_00027286


Basic Information

Item Value
RNA id TCONS_00027286
length 1812
lncRNA type intronic
GC content 0.42
exon number 2
gene id XLOC_013351
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18111994 ~ 18113888 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtagattccgtctggccctgatcATCAGTAacagttagttttgatttcttgaaGACAAGTAAAATTTCTTATCTGCAAATAACATTAAGAAATACCATACATTTGGTTTAGACTGGAATAACTTCAGAAAGACAGTTAAACTGAGGTAAACTCAGGATACGTTAACGTTTGAAGTAAAATGGCGGTAAACCACGTGACTGCAGTAACAGCAAATAggctaaaaacatgtttttaacgCATTTAAAACGTTTTTTATCTTTAATCAAAAAAAGGAGAGCTTTAAGCAGGACTCATGTAAACATCTTCCAATCCAGTTCCCTGCTCATTTGCAAATATCAGACCGTATTTCTCCACACAAAACCACAGACATCAATATGTCGCACAATGTAACGTTAGCCTACTTGAGCACATTGTCACCATCCATCACTCGAACTGAACTCCACCTTCGGTTTTTCTCTCTTCATATAAGTGTGTAACCACCTCAATTTTCCCCTCTATCAATCTTAAAAAGGAACTCACTTCCAGTAGAGACGCCATATGGCTGTTTTTCGTCGTTGCGGGCCGCTGTAGTGTGTGAAGGCCGAAGTCTCCGCCGGTAATTTAGTCAGCGCGGGAGAGATGGATGACGCGCCTCACTCCAGTCAACGGGCCAAGCGCGCGCCCGGAGAGGCACCTGGCACGTGCCACAGCAGGAAGCATTTGGCGTGCATCTCGCGCGACCTTTCTGCCACCCCACTCTATAACACCGTGCTCACAAGCAGACATAAATCCAGATGATCACATTTATAACGCGTTTGATGACTTTTATAGCTGATGTAACTGTCAGTGTTGGTCACTGTCCTAAATGAGCAGGCATACAGATTAGCGCATCTCGGATAAAGATGAGTGCGATTACAGTGAGGTGTTTTTACTCTTCAAAGTCAACTGTATGATATGTGTTAAGGTTGTGAGAGTTTAGGTGTTTACATTATCAGCGTGATCAAATCTTTACTGGATAAAATGTTAATTCTACAAAAGTGTTTCATTGCTTTGACATGGGTGTtacataattaattcattttacttcggcttagtcacttttatcaggggtcgccacagcagaatgaaccgccaacttatagagcatatgttttacgcagcagatgctcttccagctacaacccagtaatgggaaacatccatactcaatcacacacatacagccaatttagtttatccaattcacctatagcgcatgtctttggacttgtggtgaaactggagcacccggaggaaacccacatgaacacatggagaaattcaaactccacacagaaatgccaactgacccagctgtggcttgaaccagcgaactccttgctgtgaggcgattgtgctacccactctgCCACCGTGATGCTATTGTGCTGTtacaaaaagtaaattttttggTATAGAAATTTTACattaacagacttttattttgtgtttagcgGTGTAAATATGAGATTGCATTTTTTGCTTAATGTTGAGACTGATAGTTTTTTGATTTCCAAACTTGATCTTCCAGAAAAGCCTAATGTATCAAATAACATACAAAACCATTTTcttgtattcattaattttccttcgacttagtccctttattcaccaggggtcgccacagcggaatgaaccgccaacttatccagcatgttttacacagcggatgcccttccagctgcaacccagtactggaaaggtccatacacactcattcacacacataccctagagccaatttagtttatttaattcacctagaGTACGTCTTTAGACTGGGGGGAAAAGAGA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0006396 RNA processing biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0021983 pituitary gland development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0060322 head development biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027285 lncRNA downstream 325204 17777527 ~ 17786790 (-) True XLOC_013349
TCONS_00026394 lncRNA downstream 399327 17707958 ~ 17712667 (-) True XLOC_013348
TCONS_00026959 lncRNA downstream 619288 17491321 ~ 17492706 (-) True XLOC_013345
TCONS_00026958 lncRNA downstream 1734653 16372210 ~ 16377341 (-) True XLOC_013329
TCONS_00026348 lncRNA downstream 1804057 16258787 ~ 16307937 (-) False XLOC_013327
TCONS_00026400 lncRNA upstream 437320 18551208 ~ 18555561 (-) True XLOC_013354
TCONS_00027287 lncRNA upstream 515178 18629066 ~ 18634673 (-) True XLOC_013358
TCONS_00027288 lncRNA upstream 600085 18713973 ~ 18727032 (-) False XLOC_013361
TCONS_00026409 lncRNA upstream 600085 18713973 ~ 18727032 (-) True XLOC_013361
TCONS_00027289 lncRNA upstream 630574 18744462 ~ 18749405 (-) False XLOC_013362
TCONS_00026393 mRNA downstream 387699 17707688 ~ 17724295 (-) False XLOC_013348
TCONS_00026392 mRNA downstream 390184 17707688 ~ 17721810 (-) False XLOC_013348
TCONS_00026390 mRNA downstream 580511 17516569 ~ 17531483 (-) False XLOC_013347
TCONS_00026391 mRNA downstream 582231 17516570 ~ 17529763 (-) True XLOC_013347
TCONS_00026389 mRNA downstream 598568 17511995 ~ 17513426 (-) True XLOC_013346
TCONS_00026396 mRNA upstream 361786 18475674 ~ 18524624 (-) True XLOC_013352
TCONS_00026397 mRNA upstream 413282 18527170 ~ 18543358 (-) True XLOC_013353
TCONS_00026398 mRNA upstream 433135 18547023 ~ 18587745 (-) False XLOC_013354
TCONS_00026399 mRNA upstream 436530 18550418 ~ 18584839 (-) False XLOC_013354
TCONS_00026405 mRNA upstream 522385 18636273 ~ 18667416 (-) False XLOC_013359
TCONS_00026386 other downstream 696405 17411870 ~ 17415589 (-) False XLOC_013343
TCONS_00026341 other downstream 2236214 15875662 ~ 15875780 (-) True XLOC_013321
TCONS_00026338 other downstream 2501757 15578502 ~ 15610237 (-) True XLOC_013318
TCONS_00026339 other downstream 2523793 15588087 ~ 15588201 (-) True XLOC_013319
TCONS_00026322 other downstream 3075725 15036151 ~ 15036269 (-) True XLOC_013308
TCONS_00026401 other upstream 455353 18569241 ~ 18569322 (-) True XLOC_013355
TCONS_00026402 other upstream 463586 18577474 ~ 18577549 (-) True XLOC_013356
TCONS_00026403 other upstream 463926 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026408 other upstream 582319 18696207 ~ 18701764 (-) True XLOC_013360
TCONS_00026410 other upstream 630574 18744462 ~ 18749405 (-) True XLOC_013362

Expression Profile

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