RNA id: TCONS_00026398


Basic Information

Item Value
RNA id TCONS_00026398
length 8009
RNA type mRNA
GC content 0.42
exon number 28
gene id XLOC_013354
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18547023 ~ 18587745 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAACAGATGGAATTCACGGCAGACCGCTAAGTGCTGTGATTGAGGATGCTCGGGGAATAACTATCATACATACAAACTGCACATGTTCGGACAGTACTGATGTGCGCCAACAGAACTGCGAGGCCCTCTGTCGTTCCAGCGCCGTTTGAAATAACGAGCGATCAggccaatgaaaaataaaagtttctcATCTGATTGAAATCTACAACATCCTGGTTGCTATTTCGGTGCTGCTTTAGCTCTTTGTCCTGAGCCTGAAGGTCCAGTGACAGCAGCCATGTTTCTGTACAACATCACCCTGCAAAGGGCAACTGGCATCTCGCATGCCATCCATGGAAACTTCTCAGGAACCAAGCAGCAGGAGATTGTTGTTTCTCGAGGAAAAATTCTGGAGCTGCTGCGTCCTGATGCCAACACCGGGAAAGTTCACACACTGCTCACTATGGAGGTGTTTGGTGTCGTCCGCTCACTCATGGCCTTCAGGTTGACGGGTGGAACTAAAGACTACGTTGTGGTGGGCAGTGACTCTGGTCGTATTGTGATCCTGGAGTACCATCCTTCCAAGAACATGTTTGAAAAGATCCACCAGGAGACCTTTGGCAAGAGTGGCTGCAGACGCATTGTGCCTGGGCAGTTTCTTGCTGTTGATCCTAAGGGAAGAGCTGTAATGATAGGTGCCACAGAGAAACAGAAGTTGGTTTACATCCTGAATAGAGATGCAGCAGCTCGCCTTACCATCTCCTCCCCTCTAGAGGCTCACAAGGCTAATACACTTGTCTACCATGTGGTTGGTGTGGACGTGGGCTTTGAGAACCCCATGTTTGCCTGCCTGGAGATGGACTATGAGGAAGCAGATAATGATCCcactggagaagcagcagcaaaCACACAGCAGACTTTGACCTTCTATGAGTTGGACTTGGGTCTCAACCATGTGGTTCGCAAGTACAGCGAGGCTCTGGAGGAACATGGCAACTTCCTCATCACAGTTCCCGGTGGTTCGGATGGTCCCAGTGGTGTGCTCATTTGTTCTGAGAATTATATCACCTACAAAAATTTCGGTGACCAGCCAGACATCCGTTGCCCAATCCCACGCAGGAGGAATGACCTGGATGACCCTGAGCGAGGCATGATCTTTGTCTGCTCTGCCACCCACAAGACCAAAtctatgtttttctttttagccCAGACTGAACAGGGCGACATCTTTAAGGTTACACTGGAAACCGATGAGGAAATGGTGACAGAGATTAGAATGAAATATTTTGACACCATCCCAGTGGCCACAGCAATGTGTGTTCTGAAGACTGGATTCTTATTTGTTTCTTCAGAGTTTGGAAaccacTACCTGTATCAGATTGCCCACTTgggtgatgatgatgaagaaccAGAGTTTTCTTCTGCCATGCCTTTGGAGGAGGGAGACACCTTCTTTTTCCAACCTCGTCCCCTTAAAAACCTAGTGCTGGTGGACGAGCAAGAAAGTCTTTCACCCATCATGTCCTGCCAGATTGCCGATTTGGCTAATGAAGACACCCCGCAGCTGTATGTGGCGTGTGGCAGAGGACCCAGATCTACATTGAGGGTTTTGAGACACGGACTGGAGgtgtcGGAAATGGCTGTTTCAGAACTCCCTGGTAACCCCAATGCTGTGTGGACCGTCAGAAGACATGTTGAAGATGAGTTTGATGCCTACATCATTGTGTCCTTCGTCAATGCCACCCTGGTACTTTCGATTGGTGAGACTGTGGAGGAAGTGACAGATTCTGGTTTCTTGGGAACAACACCCACCCTGTCCTGCTCGTTGCTCGGGGAAGATGCACTTGTTCAAGTGTACCCTGATGGAATCCGTCACATCCGCGCGGATAAAAGAGTGAATGAGTGGAAGACTCCGGGAAAGAAAACAATCATTCGATGTGCTGTCAATCAGAGACAGGTGGTGATTGCTTTGACTGGCGGAGAACTGGTCTACTTTGAGATGGATCCGTCTGGACAGCTGAATGAATACACAGAGAGGAAGGAGATGTCTGCTGATGTTGTGTGCATGAGTTTGGCAAATGTGCCCCCTGGTGAGCAGCGTTCCCGTTTCCTGGCTGTTGGTTTGGTGGACAATACCGTCCGCATCATCTCTCTGGATCCATCCGACTGTTTGCAGCCATTAAGTATGCAGGCTCTTCCAGCCCAGCCAGAGTCTCTTTGTATTGTGGAGATGGGTGGAGTGGAAAAACAGGATGAGCTGGGAGAAAAGGGCACCATTGGCTTCTTGTACCTTAATATTGGCCTGCAGAACGGAGTGTTATTGCGTACTGTGTTGGATCCAGTAACTGGGGACCTGTCTGATACTCGAACTCGGTATCTCGGCTCTCGTCCTGTCAAGCTTTTTAGAGTCCGGATGCAGGGCCAAGAAGCTGTTCTGGCCATGTCCAGTCGTTCCTGGCTGAGTTACTCATACCAGTCTCGATTCCACTTGACGCCACTGTCATATGAAACCTTGGAGTATGCTTCAGGCTTTGCTTCAGAGCAGTGTCCTGAGGGTATCGTTGCCATTTCCACCAACACACTGAGGATTTTGGCTCTTGAGAAACTGGGTGCCGTCTTCAACCAGGTTGCTTTCCCACTGCAGTACACGCCTCGCAAGTTTGTCATCCACCCAGAGACCAACAACCTGATCCTGATCGAAACCGACCACAATGCCTACACTGAAGCCACCAAAGCCCAGCGCAAGCAGCAGATGGCTGAGGAAATGGTGGAGGCAGCAGGAGAGGATGAAAGGGAGCTGGCAGCAGAAATGGCAGCAGCTTTCTTGAATGAGAATCTGCCAGAAGCCATCTTTGGGGCACCTAAAGCAGGCTCTGGGCAATGGGCCTCACTTGTACGCTTGATCAACCCCATCCAGGGCAACACATTGGACCTGGTGCAGCTGGAGCAGAATGAGGCAGCTTTCAGTGTGGCTATTTGCCGCTTTCTGAATGGAGGAGATGACTGGTACGTGTTGGTGGGTGTTGCAAGAGATATGATACTCAATCCACGCTCTGTTGGCGGAGGATATATTTATACCTATCGGATAGTTGGAGGTGGGGACAAGCTGGAGTTTTTGCACAAGACCCCTGTGGAGGACGTGCCCCTGGCTATTGCTCCATTTCAGGGACGGGTTTTGGTTGGAGTGGGCAAGCTCTTGCGCATCTATGATTTGGGAAAGAAAAAACTTCTCCGCAAGTGTGAAAACAAGCATGTTCCTAATTTAGTGACAGGCATCCACACTATCGGCCAGCGTGTGATTGTTTCAGATGTTCAGGAGAGTCTGTTCTGGGTGCGCTATCGCCGCAATGAGAACCAACTCATCATCTTTGCTGACGATACTTATCCTCGGTGGATCACCACTGCCTGTCTGCTTGATTATGACACAATGGCTTCAGCGGATAAGTTTGGAAATATCTGCGTTGTTCGCCTTCCCCCAAACACCAGCGATGATGTTGATGAGGACCCCACAGGGAACAAAGCATTGTGGGACAGAGGCTTGCTTAACGGAGCTTCACAAAAGGCTGAGATCATCATCAACTATCACATAGGAGAGACTGTGCTGTCGCTCCAGAAAACCACACTCATCCCTGGAGGATCCGAGTCTCTGGTGTACACCACACTATCTGGAGGCATTGGCATCCTGGTTCCCTTCACCTCTCATGAGGATCACGATTTCTTCCAGCACTTGGAAATGCACATGCGCTCAGAGTTTCCTCCTCTGTGTGGTCGAGATCATCTCAGCTTCCGCTCATACTATTTCCCTGTCAAGAATGTGATTGACGGAGACCTGTGTGAGCAGTTTAACTCTATGGATCCTCATAAGCAGAAGAGTGTCTCTGAGGAGTTGGACCGTACACCTCCAGAAGTGTCAAAGAAACTGGAAGACATCCGAACACGCTATGCCTTCTAGGATCTTCACATCTGGCAGGCGCACCATGAGAAAATCAATTGTTTTTCCGGGCTTCCCATGGCTGTGGGCATCAAACTTTCCTACCACAAGTATAGGAGCTGCAATCTGGTGACTGCTGAAGGAAGTTCCCCATTTAACTGGGGCCAGATGGGAGCTGTCAAACTCCCAGTGGTCAATGACCCGGTCCTGCTTGAAATGACTGTCAGTACTGTACTCGGTACAAAGCGTTTCAGTTTTTTAGTTCATACTGAGTGGCTGCATAGATACAAATCTTTTCAGAAGTATGCTTTCATGCATCAGCCCATATACAAGAATGAATTTTATTTGTGTGGATAAAAGTCTATTACTAATTTTGTAGCTATACCACAGTGCGAACGAAATCCAGCTCAATCCACATTTTGCTGTATGAATCAGTCTGCATAAAACCGTTCCATCATTCGTGTCTCGGGTATTTAAATAATTTCTCAAAGCATAAAAAGATGTTTCCACTCTTGTAAAAACAGTGAAATTGTAAAATAGCTTTAGTTTTTGTCTCTACGTGGAAACAGCAAATTTGTGGTTTGTAACTACTGCTTTTTTGTGGAAAGGCCATAAATATCCACAACCCCAAAAAAAGAAATCGGGCTGTTTTTGTCAAAGTGTGAGAAtttgtaaataaactttttttttactttgtcctGTATTTCCGTGTCTGTCACAAGACTCTCTGTTTGTCTGTAACTGAGCCCACAGGCAAAGCAGGTTTTTActgctgttttctttttcttttttttttctttttttggtggaagcCCAATAGTGATCATGCATCTTTCTCATGACGATGAGTCATGTTGTGTACAATCCCTTAAAATTGTTATTCAGTTTTAGTCACTTAAAAgatgaaagtttaaagcatttaGTTTCTTTAGGCTCACCAAATACTGTGtagaaagctttaaaaaaaaactttaggtaCAGTTTTCTCAGATTGCTGCATGGCCactactttaaagggcacctatgatgaaaatcaacttttggacataactgtgtatatgtatagtgcgTCCAGTCATATTGGAGTGCTATAAACCTAGTaagtctcttttaaaaaaaattcctaaTGCTAAAATAGGACCCatatcccagtgattttgaggcccactgcaacgtgacataggaggGCTGTTTTCCCTGCCTTCTGAAATTATTGACTGGTGCCATGTTTCTAAAATGTCATGTATACACGTCCacagaatattcatttacaaagaaATGGATTAAAACATGTTACAACTCGGTGACCATCTGCActtcaataattaattttctaAGTTTAAAACTTTTCTAAAACAgcttgtttgtaataaagacagtaaaatcattatgtaattcttaactgctAAAATTACCATggccacatggtgtcagtaaatgcgcttatgtgtgtgtgtgaactgtagATGGCATTTGTGTGACTCATTAGCTATGTttacatccaaaaatgcgaattaacttcTTGTGCAAaattggaatatcgcataaaagatgtgcgaataaagaaGCATTTCCATTCAACGAGtctaagagaacaaaatcgtcacttcctgattaactggcgacaaatatcaaaagtaaaaatagaATTTGCTGTGGGttgagaagctgcgtcaattttttttttcatttaataaatgacttaagAAGGCAACCCTGACACAGTGAACGCAaggtggtgtttgaaggtgtcagaagcagagcccagacgctgttgattctggaggtcattgaAATTATAATAActctaatactgaaatggttaaagtgttttttttaaatgaccaaatcaacatttcagatgttttacagtgtgctcagtttgctggtttatccatttacacacattttcatcatcacatgatctcttataacaaaatcacattttaatgtgcatactagaatttattcagtaaagtgtttccatcgcagttcaTGCACATCtattcttatcgaataaaaaatgtttattctaCTCGCTTATGCGCATaaccaaaattttttttaaatgtatgcgcatcttggcatttccatcaactgttttttttttttttaatcttaaatgcgcataaaaatagatgTAAACGAAGCTATTGTTTCAGAAAAGCTTGAATAAACTTTACCACAAATACTTCAAAttaacttacttggtatttttcaCTAATgggctgtatttcagcttcatccgtgtctgtctctatcactgactgctgtttatctactGTAACACAGCAGAAGCAGACATACATGTGGGtgcggtgggcggggagaagcagttcatttggatttaaagccacagacTACAATAACAGCTACACTTACCAGACACCAAAATAGCCAAattctacattatataataaatcatttgatgGGTATTTGCGTCTAAACTtttgacacattctggagacacaaaaggcttgtaacatcttgtaaaaggggtaaagtCGGTGCCCTTTAACTTGATGAATcagttttttaaagggatagttaaggGAGGATTTACTCGCTATTTACACCACTGGTTGCAAACCTTTTTCTGTTGGACGCAAAAGATAGTAGTGGTTAccatagtagtagtaaaaaacatactatggaagtcaacgattACCAGTTTCCAACCTTCTTTAAAttgtcttttgtatttaacagaaagaACGGTGGAATTTTAGTTGATCTGTCCCTTTAATCATGTAACACTTTTGTTTTCCTACTCTGTGTTCTACTTATCAGCTTCATTTCACTTTCATCTCAATATCTATTTTTAATCTTGAGCAATTTGTATTCTGCACCGTCACAGGACTAAATATGAAATCTTATCGTGCAAATTCCTATTTGTGTCAAAAGAGGATTTCACTCTATGAAtcatcattcagtcattttctccTCATTATTGCCTGCAGTCAGTGAACCAAAACACAGATCAACTATCCTAACTATTTAATTTGAATGAGTTATGTCCTGTTCTCGCCAAAACCCACAATTGTCAACGACACCGGTGGTCTCCGCTACACCTATGCTCTGCTTATCACTTTAATAGCactattaataaataacaaataatataaagtcattattttactTGACGTAGCATgagcactgtcatcatggcaaagataaaataaatcaggtattagaaatgagttattaaaactattatgtttagaaatgtgctgaaacaatcttccctccgttaaacagaaattgggggggggggggggaacaggggcgttaataattcaggggggctcataattttgacttcaactgtatatgttattgaaaaatataaaatgcCAATTTAAAAGAGggaaaatcaagaaaagcaaaaaaaaatgtgttgaaattttgtaggttgtaattctaattttttattttttattttctgtttgaattgaattgtattatctttcaatttctcagtatgtttgatgactaaaatattattttaataaatatatgtttaatgaatctgttttgtttaaatgcaccaaaagacattgcctatattcacaaaaaaatgataaaaatacattttcaaaatggggaaGACTTTATGTCTTGGTTGGACatgttatgctgagcactgcatataCAGGTAGTTTCGTGTTTTGCAAATGTAAAACTGCAACTGCAGTGACCCCAGATTACTGCTGACTGCACCACCAGAAGTCAATTGTAGTTGTAATTTGTAATCCAAATCTTGCATGCAACACCAGTGAATGGTCAactattacatttcaaaataaacataGATGTGGATGCTAGGATAGAGTATCATCTTGGGGTCTGTGTTGATTGGGGGTCTTCTGTGGGATAACATAATTCATGGGATCCTTAGAATGTTTTGCCCACTCGAAATTCTTTCGTGAATTGAAGAGCCTTCCCTGGTGAAGATGTGAGGACATAAAGAAGGTTGAGATATTTCAGAGAGTGCTTGTAACCTGGTGACGTTTAGTGGCACATTTGGAAGTTTGCATTCCCCACTCTTCCTTTGGGGGGCTTTCCATATTGATGTGATGTAATCTGGGTTGACAGATG

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0071005 U2-type precatalytic spliceosome cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03021 Transcription machinery
ko03041 Spliceosome
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-2901 Predicted to enable U2 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be part of U2 snRNP and U2-type precatalytic spliceosome. Predicted to be active in nucleus. Orthologous to human SF3B3 (splicing factor 3b subunit 3).

Ensembl:

ensembl_id ENSDART00000191973

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027286 lncRNA downstream 433135 18111994 ~ 18113888 (-) True XLOC_013351
TCONS_00027285 lncRNA downstream 760233 17777527 ~ 17786790 (-) True XLOC_013349
TCONS_00026394 lncRNA downstream 834356 17707958 ~ 17712667 (-) True XLOC_013348
TCONS_00026959 lncRNA downstream 1054317 17491321 ~ 17492706 (-) True XLOC_013345
TCONS_00026958 lncRNA downstream 2169682 16372210 ~ 16377341 (-) True XLOC_013329
TCONS_00027287 lncRNA upstream 41321 18629066 ~ 18634673 (-) True XLOC_013358
TCONS_00027288 lncRNA upstream 126228 18713973 ~ 18727032 (-) False XLOC_013361
TCONS_00026409 lncRNA upstream 126228 18713973 ~ 18727032 (-) True XLOC_013361
TCONS_00027289 lncRNA upstream 156717 18744462 ~ 18749405 (-) False XLOC_013362
TCONS_00027290 lncRNA upstream 199639 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00026397 mRNA downstream 3665 18527170 ~ 18543358 (-) True XLOC_013353
TCONS_00026396 mRNA downstream 22399 18475674 ~ 18524624 (-) True XLOC_013352
TCONS_00026395 mRNA downstream 424054 18087260 ~ 18122969 (-) True XLOC_013350
TCONS_00026393 mRNA downstream 822728 17707688 ~ 17724295 (-) False XLOC_013348
TCONS_00026392 mRNA downstream 825213 17707688 ~ 17721810 (-) False XLOC_013348
TCONS_00026405 mRNA upstream 48528 18636273 ~ 18667416 (-) False XLOC_013359
TCONS_00026404 mRNA upstream 48528 18636273 ~ 18667416 (-) False XLOC_013359
TCONS_00026406 mRNA upstream 49156 18636901 ~ 18821929 (-) False XLOC_013359
TCONS_00026407 mRNA upstream 69235 18656980 ~ 18662577 (-) False XLOC_013359
TCONS_00026413 mRNA upstream 215794 18803539 ~ 18850302 (-) False XLOC_013364
TCONS_00026386 other downstream 1131434 17411870 ~ 17415589 (-) False XLOC_013343
TCONS_00026341 other downstream 2671243 15875662 ~ 15875780 (-) True XLOC_013321
TCONS_00026338 other downstream 2936786 15578502 ~ 15610237 (-) True XLOC_013318
TCONS_00026339 other downstream 2958822 15588087 ~ 15588201 (-) True XLOC_013319
TCONS_00026322 other downstream 3510754 15036151 ~ 15036269 (-) True XLOC_013308
TCONS_00026408 other upstream 108462 18696207 ~ 18701764 (-) True XLOC_013360
TCONS_00026410 other upstream 156717 18744462 ~ 18749405 (-) True XLOC_013362
TCONS_00026411 other upstream 199639 18787384 ~ 18793265 (-) True XLOC_013363
TCONS_00026414 other upstream 227909 18815654 ~ 18821370 (-) True XLOC_013359
TCONS_00026421 other upstream 407502 18995247 ~ 18999255 (-) False XLOC_013369

Expression Profile

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