RNA id: TU7953


Basic Information

Item Value
RNA id TU7953
length 349
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G6435
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7718908 ~ 7720218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTCGGCCCACAGCTCGGTCACGTGGAGCTGGGTCCCGGTCAACGCCGCCAGGTGGCTGATGACCTGCAGGGCCGAGTCCAGACACTGACCACTCGTTCACCATGGATGAGATCACAGTCACAGCCCTGGATGAGAAGCTGAAAGTAGCCTCCCGTTCTCTTGACTTGGGGTCTTGAGCTCCTCTGCATTAATGTAGAGCGTTCCGGTTCCAGGATCGACACTGGTCACCCAGTGCATGGCGATGAACACGGCTCTCTGGCTGGCTGAGGTGGCCTTCACCAGCTGGCTCTGTGCCTCAGCCTTAAACACTGGAAGagacagaataaaaaataaaataaatcaggtTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7938 lncRNA upstream 22377 7696280 ~ 7696531 (+) True G6426
TU7454 lncRNA upstream 165810 7552349 ~ 7553098 (+) True G5986
TU7408 lncRNA upstream 434314 7283664 ~ 7284594 (+) True G5943
TU7361 lncRNA upstream 524491 7192444 ~ 7194417 (+) True G5904
TU7345 lncRNA upstream 542636 7175802 ~ 7176272 (+) True G5892
TU7963 lncRNA downstream 19407 7739625 ~ 7739824 (+) True G6445
TU7966 lncRNA downstream 117209 7837427 ~ 7839951 (+) False LOC110528753
TU7967 lncRNA downstream 117209 7837427 ~ 7839951 (+) False LOC110528753
TU7968 lncRNA downstream 117209 7837427 ~ 7839951 (+) True LOC110528753
TU8030 lncRNA downstream 124627 7844845 ~ 7845416 (+) True G6501
XM_036985694.1 mRNA upstream 168514 7414613 ~ 7550394 (+) True LOC110528450
XM_036989283.1 mRNA upstream 387866 7330452 ~ 7331042 (+) True LOC118966183
XM_021610318.2 mRNA upstream 611399 7096299 ~ 7107509 (+) False ankle1
XM_036985747.1 mRNA downstream 21344 7741562 ~ 7839934 (+) False LOC110528753
XM_036985790.1 mRNA downstream 21344 7741562 ~ 7839934 (+) False LOC110528753
XM_036986015.1 mRNA downstream 120462 7840680 ~ 7882886 (+) False LOC110528839
XM_036986095.1 mRNA downstream 120462 7840680 ~ 7882886 (+) False LOC110528839
XM_036985987.1 mRNA downstream 120463 7840681 ~ 7882886 (+) False LOC110528839
TU6993 other upstream 907287 6810994 ~ 6811621 (+) True G5581
TU6645 other upstream 1200719 6517482 ~ 6518189 (+) True G5276
TU4684 other upstream 2861843 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 2862660 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 3277000 4439966 ~ 4441908 (+) True G3351
TU7952 other downstream 4828 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 165173 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 316399 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 509079 8229297 ~ 8230235 (+) True LOC110501328
TU8596 other downstream 534924 8255142 ~ 8255878 (+) True LOC110505168

Expression Profile