RNA id: TU8049


Basic Information

Item Value
RNA id TU8049
length 517
RNA type TUCP
GC content 0.41
exon number 1
gene id G6518
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7885391 ~ 7885907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gattaggtccctatatctctctctgtttctgttcctgtccttgtcggattcttgtttgttgtgtttcatgcctgagccagactatcgtcatgtttgctgtaaccttgtcctgtcctgtcggaatctgccggtctatctgagcctacctatgtttggttattaaagaagctctgtttaagttagttcgcttttgggtcctcattcactccccataacagaagaatccgaccaagaatggacccagcgacttcggatcctctccactcagccgtcgggatccagggagcgatgctaggcagacacgagcaggaagtgtctgctgctcgacatgccgttgagaccctggccacccaagtctccaacctcacagaacaggttcaccatctccgcctcgatccaccggccacttccagggctttcgaatctccggagcccagaatcaataacccgccgtgttactctggggagcccactgaatgccgctcgttcctcacccagtgtgatattgtgttttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8030 lncRNA upstream 39975 7844845 ~ 7845416 (+) True G6501
TU7966 lncRNA upstream 45440 7837427 ~ 7839951 (+) False LOC110528753
TU7967 lncRNA upstream 45440 7837427 ~ 7839951 (+) False LOC110528753
TU7968 lncRNA upstream 45440 7837427 ~ 7839951 (+) True LOC110528753
TU7963 lncRNA upstream 145567 7739625 ~ 7739824 (+) True G6445
TU8053 lncRNA downstream 7848 7893755 ~ 7894244 (+) True G6522
TU8057 lncRNA downstream 11888 7897795 ~ 7898103 (+) True G6526
TU8026 lncRNA downstream 17630 7903537 ~ 7905319 (+) True G6497
TU8394 lncRNA downstream 147577 8033484 ~ 8033732 (+) True G6803
TU8403 lncRNA downstream 155128 8041035 ~ 8041418 (+) True G6812
XM_036986015.1 mRNA upstream 2505 7840680 ~ 7882886 (+) False LOC110528839
XM_036986095.1 mRNA upstream 2505 7840680 ~ 7882886 (+) False LOC110528839
XM_036985987.1 mRNA upstream 2505 7840681 ~ 7882886 (+) False LOC110528839
XM_036986058.1 mRNA upstream 2505 7841118 ~ 7882886 (+) True LOC110528839
XM_036985747.1 mRNA upstream 45457 7741562 ~ 7839934 (+) False LOC110528753
XM_021611128.2 mRNA downstream 14854 7900761 ~ 7935216 (+) False LOC110528925
XM_021611173.2 mRNA downstream 21359 7907266 ~ 7935217 (+) False LOC110528925
XM_036986235.1 mRNA downstream 28156 7914063 ~ 7935217 (+) True LOC110528925
XR_005053652.1 mRNA downstream 66886 7952793 ~ 7952888 (+) True LOC118966768
XM_036986300.1 mRNA downstream 163088 8048995 ~ 8085970 (+) False nmur1a
TU7952 other upstream 159782 7725046 ~ 7725609 (+) True G6434
TU6993 other upstream 1073770 6810994 ~ 6811621 (+) True G5581
TU6645 other upstream 1367202 6517482 ~ 6518189 (+) True G5276
TU4684 other upstream 3028326 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 3029143 4854521 ~ 4856248 (+) True G3596
TU8398 other downstream 150710 8036617 ~ 8037154 (+) True G6807
TU8580 other downstream 343390 8229297 ~ 8230235 (+) True LOC110501328
TU8596 other downstream 369235 8255142 ~ 8255878 (+) True LOC110505168
TU9946 other downstream 1573041 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 2097868 9983775 ~ 9984464 (+) False LOC110510920

Expression Profile