RNA id: TCONS_00027287


Basic Information

Item Value
RNA id TCONS_00027287
length 3847
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id XLOC_013358
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18629066 ~ 18634673 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGCGGCTGCTGTGGGCCTAACGGCTCGTCTGCTTCAGTGTGGTGTGCGATAAAGGACACAAAAGACCcaccattttaaacatttttattcctTACCGTAGCATTAAAGATAAAAACAGTCCATAATTACACAAAGACTGAGGTTGTGAAAGGAAAGAAAGAGCACTGACCAATAGTCACGATATCAACACTAATGAGAAGTTAATGAGAGCAAACACAGTGAGGATATGTACAGTCTGTGCTGAAGAATTCCTTCACATGAAGAACAGGATTCAACATCATTCAAGTTGATAGAGGAGTCTGTTCGGAAAAACTGTAGCCTCATTTTTATACTTCATATCAGGATTTTATGCTgccgttttattttaaatggaaaataaagCCTTGAAAAAATGTTAAGAAAACAAAGCGACGCATCAGTCGCTCAGCGTTTCTATCTTGATGATACAATCATGTGCATGATTGTGGAAAAAGCagcaaagaaaatgaaaaagcagTTAAATTTCACAGGCTCTGTAATCTTCATCTCATTCAATATTTCACAGCCTTCGCATCCTGCAAACAATTCAGCAAAGATGATACGAAGTCCAAGAAAAAGCTCTCTCAATGTGACAATAAGGATGCACAAAGACTGATAATTTAGTGCTAAGCACATTGGCAAGAGCATAAAGAAAATCAAGACTATTTGGAATTGATCTCTTCACGCAATTTGGCCTAAAGAACATTTCAAATAGTGGTGGACAATGTAGTCGTTCATAAATTGCTTTGCAGCAGGCTACAATCCTCCCGTGGCACAAAAACAAGACGAGAAACATTTCTCCTTGCCAACTAATACCATCcaggattaataaatgctttaaagaTTAATACGAGAACTTCACGAGCCAACTTATTTTCTTTAATCCAAAGACAAAAGTCGCACAACAGCAGCAaccaaaaaaaaccccaaaaaaacaGGTTTAGTCATGGGATAAAACTCTTTGGTGATGAGAGGGCAGCCATCCTACATATCCATGATATTAGAATTTCACTGTGAAATGCCCAATAATAATCCCTCAGAATAGGCTTAAATATAATAAAGCCACTGCAGCATTCGGTGTTGAATAGTATTCTGGTATACGTTCGTCCAAAGACAATTACGCTTTACTGACAATGTATAAAAGCACTTAGTGTGCCACAGGTCTGGATTTTCAAAGGGTTCAAGAGACTTTTTTCCATTGAATACAACTAGGTAGCTCTTAAAAATCAAGATCGGAGAAGGTTTTCAGGTGAGAGAGCTTTTCCCACCCTGATCCCGAAGGCACGGTGCTTCAGCTTAGCTTAAAGTAGAACAAACACGAGGATGGTGGCGCACAGGAGAAGCCGTGAATCATGTGTGGGTGGAGGACAGCTGGTGGGTAGACGATCCGTGCCCTATTTTAGAGCCCAGATTTGTGCGCGTGAATGTGTGTCAATAAATGCTCTGTAAGAAGACTAAAGGAACAATAGCATGTGTTTATGCGTCTTATAATGAGGTTAGCTGTGCTCTGGAGAAAGGATGTGTCCAGAAGCGAGGACAAGGCACGCAAGCATGTAACATGTGTGCGCATTTACACACTGAAGTAGCTGAtatgtttacattttgaaaaaaaaacaacaactactgcACCTGAATACTCGGACTAGGCCAAAGCAGAAAGCTAGAGAACAAGGGACATGATGGGAAGaaaacagaaacagtttcttGGGGAACGAATCAGGGGAAAGTTTCTCTAGGGAAACACAAAATCATCAAAATGCATTTTACCCCTTAAAACTTTCTAGTTGTATGCAAAACTTTGAGAAATCCTCTTAAGAAACAGTATTTGCTCACAAAGTGGTGATTGCAAATAAGTAGACTACCGCAGAAGTTCTTTGCTTTATTATTGAATGTTTATAAACAAAACCTCACAAAGAACTTACATTTTTTAGCGAGTGAACGCAAACTTTCACTCAATATATAGATATTTTGCAAGGCATTGAATTACAATTAGCAATAGCTCACAAAATGTTTCCTTTTATCACAATAACTGCATCACTTCTCAAAATTTGTGTTCACTCTCAAAGCACAGTTTCTCAGGGGAACGCTAACCTTTTGCAAGCCACTTCCAAATTTCTCAACACAACAAAATATTTAGAAGAGACAGCATTTCCTGCTCACCTCATATTTTTCCCTAGCATGTCCCATTTAGGGGCTCCGCAGAAAGCGCTAGGCATTCTTGCAGACGTTCTTAATCTTTCTGCTTTCCTTTTAAACAAAAGaatgtaataaattataatataaacttGATGTAAACCGACTGAACAGCAGCAAAGTAGTGTCTACATGCTTTCAAAAAAACTCAATCGATGATGTCCACCAATCTGTCAGCTAGTCTGTATCGCAAAATGACATCAGCCTTTACAATGGAATGCCTTTCGCCCTTTTTTCATCACCTAACACTATTAGATAAAGAGAGTAGTGTGCTGTAGTGTAGACCAGGAATCAAGCTCTACCACTGTTCACAGTGCATCTCTAAAACAATCACCACAGTTTTATTAGCGTCACTTTCTAAAAGTACTCCAAGTATACTGAATATATTGCTCGAGTGTGTTCACATTGGACTGTGTGTCAGTGGTTTTCAGTTTCTGGTATTGAGTATCAATCTATCCCTCCTCCTCAGAGCAGAGGAATGATCAATGCCCAAATGTGATTAGCAAAAACCAAGTGGAAAGACAAAGCTGTTGCTGTGGCACACACTAAGTCAAACTGTTAGCATGATCATCTGGACACAAACAACCAAAACTGTCCTTTAGGACAAAATAAAGCTCCATTTAACAGCAGGACTGCAACATCCCCTCAGCCATATACGTCCAGTCTAATTTCAACACTATATTGGTAGTGAAAAGACCCACCACTATGATCAAGCTTttagttaaagggacagttcatcccaAAACTTTAATTATGTCATTTGTTCATCTTTATGATACTTCAAACCATTGAGTTTTACAGacaaaaactgctttaatctgcAAAACAGCAAGGTATTTTGAAGATAAAAGTCAATCTTACAGGTTTGTGAAGACAtaatggtgagtaaattatgttttcattttttgggtgaactctcgcTTTAATGAATCACAGAGAACTACTATGGTGCACTATGGTGACCGTTGGTCTCACTCATCTAGCTGGCTATTAGACCGATGGGAAAGAGCTCCTGCATCATTACTAGTCAGCAAATGTCATAAATATGAGTTAATTCCATTCCCAGCACATAAACCTAACATGCTGTTTAGTGGTGAAACATTAGCGTTCCTTGCCAAGTCAAGTTCCTTGTCCTAGTTGAGGTACGCCTGCAAGGAAAAGCACAATTACTGGCATCTCGTCTCAAAACCACCACATCATGGAAAGATGATGCCCAGGATCCCGTCCGCTCGGGACAGCGTCGAATGGTTATAAGATCATGAAACATTACTTCTTGATCATGTTTAACAGGCACACTAAGTGTGTCAAGTGGATAATGGGTGGTTTTGTTAATGGTAGTCCATCAGTTGGTCAGTTTCTATGCACCTGGTGCCCAGATTCACTTTCCAGGAAAGACTGAGATCTTGCCAGCCTTGGCCAGCTTGTCAATGATCTGGGCCTCGTAATCGGCATCATGGACGCCTGTTTTGCGAAACTCTCCAGAATAGCGGTTCTGCTCCCAGTAGTGGTGCCAGTTTCCCCGACTGTCCGCCCCAAAACCGAATACATTCACCTGTGGAGCGAAGAACAGCACGAGCATGCCGGTAGATGGGTAACGTCCATGATGACGTGTCCAGCGGTCGTGAATATATTTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026400 lncRNA downstream 73505 18551208 ~ 18555561 (-) True XLOC_013354
TCONS_00027286 lncRNA downstream 515178 18111994 ~ 18113888 (-) True XLOC_013351
TCONS_00027285 lncRNA downstream 842276 17777527 ~ 17786790 (-) True XLOC_013349
TCONS_00026394 lncRNA downstream 916399 17707958 ~ 17712667 (-) True XLOC_013348
TCONS_00026959 lncRNA downstream 1136360 17491321 ~ 17492706 (-) True XLOC_013345
TCONS_00027288 lncRNA upstream 79300 18713973 ~ 18727032 (-) False XLOC_013361
TCONS_00026409 lncRNA upstream 79300 18713973 ~ 18727032 (-) True XLOC_013361
TCONS_00027289 lncRNA upstream 109789 18744462 ~ 18749405 (-) False XLOC_013362
TCONS_00027290 lncRNA upstream 152711 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00027291 lncRNA upstream 180981 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00026398 mRNA downstream 41321 18547023 ~ 18587745 (-) False XLOC_013354
TCONS_00026399 mRNA downstream 44227 18550418 ~ 18584839 (-) False XLOC_013354
TCONS_00026397 mRNA downstream 85708 18527170 ~ 18543358 (-) True XLOC_013353
TCONS_00026396 mRNA downstream 104442 18475674 ~ 18524624 (-) True XLOC_013352
TCONS_00026395 mRNA downstream 506097 18087260 ~ 18122969 (-) True XLOC_013350
TCONS_00026405 mRNA upstream 1600 18636273 ~ 18667416 (-) False XLOC_013359
TCONS_00026404 mRNA upstream 1600 18636273 ~ 18667416 (-) False XLOC_013359
TCONS_00026406 mRNA upstream 2228 18636901 ~ 18821929 (-) False XLOC_013359
TCONS_00026407 mRNA upstream 22307 18656980 ~ 18662577 (-) False XLOC_013359
TCONS_00026413 mRNA upstream 168866 18803539 ~ 18850302 (-) False XLOC_013364
TCONS_00026403 other downstream 51172 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026402 other downstream 51517 18577474 ~ 18577549 (-) True XLOC_013356
TCONS_00026401 other downstream 59744 18569241 ~ 18569322 (-) True XLOC_013355
TCONS_00026386 other downstream 1213477 17411870 ~ 17415589 (-) False XLOC_013343
TCONS_00026341 other downstream 2753286 15875662 ~ 15875780 (-) True XLOC_013321
TCONS_00026408 other upstream 61534 18696207 ~ 18701764 (-) True XLOC_013360
TCONS_00026410 other upstream 109789 18744462 ~ 18749405 (-) True XLOC_013362
TCONS_00026411 other upstream 152711 18787384 ~ 18793265 (-) True XLOC_013363
TCONS_00026414 other upstream 180981 18815654 ~ 18821370 (-) True XLOC_013359
TCONS_00026421 other upstream 360574 18995247 ~ 18999255 (-) False XLOC_013369

Expression Profile

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