RNA id: TU8924



Basic Information


Item Value
RNA id TU8924
length 201
lncRNA type intronic
GC content 0.40
exon number 1
gene id G7250
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8259327 ~ 8259527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACATTGACAGATGAACACCTTTCTGTTTACTCTGAACAAAACATTGTACCTTAAAACAAACCAGAAGGACAAATGAAAAATACATTACTCACAGGGATAGAGGGAACCAATGTTAAACAGGTCACTTTTATGTAAATACATATGCAGAACATCTAAActtacactgagtggacaaaacattaggaacacctttctaatat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8913 lncRNA downstream 10123 8243322 ~ 8249204 (-) True G7241
TU8910 lncRNA downstream 18206 8240876 ~ 8241121 (-) True G7238
TU8860 lncRNA downstream 27541 8197126 ~ 8231786 (-) True G7213
TU8857 lncRNA downstream 33699 8194749 ~ 8225628 (-) True G7211
TU8834 lncRNA downstream 114946 8143980 ~ 8144381 (-) True G7189
TU8873 lncRNA upstream 13397 8272924 ~ 8300709 (-) False G7214
TU8878 lncRNA upstream 13397 8272924 ~ 8300709 (-) False G7214
TU8879 lncRNA upstream 13397 8272924 ~ 8300709 (-) True G7214
TU8938 lncRNA upstream 111602 8371129 ~ 8418890 (-) True LOC110529747
TU8983 lncRNA upstream 162047 8421574 ~ 8421860 (-) True G7303
XM_036986834.1 mRNA downstream 77196 8177281 ~ 8182131 (-) True LOC118965595
XM_021611230.2 mRNA downstream 111824 8140168 ~ 8147503 (-) True dynlt2b
XM_021611340.2 mRNA downstream 111833 8140168 ~ 8147494 (-) False dynlt2b
XM_021611403.2 mRNA downstream 112238 8140168 ~ 8147089 (-) False dynlt2b
XM_021611283.2 mRNA downstream 112473 8140168 ~ 8146854 (-) False dynlt2b
XM_036986914.1 mRNA upstream 15111 8274638 ~ 8341086 (-) False LOC110529671
XM_036986903.1 mRNA upstream 15111 8274638 ~ 8341087 (-) True LOC110529671
XM_036986955.1 mRNA upstream 113066 8372593 ~ 8419050 (-) False LOC110529747
XM_036987109.1 mRNA upstream 236398 8495925 ~ 8580377 (-) False LOC110508833
XM_036987041.1 mRNA upstream 236398 8495925 ~ 8580590 (-) True LOC110508833
TU8825 other downstream 75394 8164276 ~ 8183933 (-) False G7184
TU8827 other downstream 75394 8182308 ~ 8183933 (-) True G7184
TU8401 other downstream 219864 8039179 ~ 8039463 (-) True G6810
TU8272 other downstream 374327 7884343 ~ 7885000 (-) True G6706
TU8134 other downstream 531796 7718908 ~ 7727531 (-) True LOC110531419
TU8936 other upstream 70787 8330314 ~ 8375564 (-) False LOC110529747
TU9788 other upstream 893743 9153270 ~ 9153947 (-) True G7985
TU9756 other upstream 921928 9181455 ~ 9183034 (-) False G7965
TU9757 other upstream 921928 9181455 ~ 9183034 (-) False G7965
TU10337 other upstream 1308414 9567941 ~ 9590586 (-) True G8455

Expression Profile