RNA id: TCONS_00026406


Basic Information

Item Value
RNA id TCONS_00026406
length 3460
RNA type mRNA
GC content 0.49
exon number 20
gene id XLOC_013359
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18636273 ~ 18821929 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTgtttcatttgcatctttattgTAATGTACTTTGTTGTAACatgcaaaatacaaaataatctcAATCAATCTAATATTACCATTTCCAAATAGTGTTACTAGTCATCTTttgaaattagatttttattacaatatatatatgaaaaggaaaagaaaaaaagtaaaagtccGTTTTTTTTCAACATCATGCAACATTTCTTCAGTCTATTTTTCCCACATAAAGAAGGTAGTGGCAGACTTTCTCAGCACATTTTCCTAAATAGATCAAATTTAGTGTGTTTGATGAATTTAAAACTTGCCTCCTTACTAACCGTTTTAATCTCAGGCATGTGCCGGTATTGATGCAGTGTTAATGATTCGTGAGGTGTACCTGATGTTTCTTCAGGCCACAGGTGTGCCACAGGTGTCCCTAACAGATTTATAATTGTTGCCGGTTAATAGCACCACAAAGCAGCTGCATTACATTGGGTTTACCCCACCCGCTGTTTTTGTGTAACCGGTTTCTGACTCGCCGTGTTTGTGTTTATCACTAGTCTCCTGTGAAAAACGGAACAAGCATGGACTCTTCACTGACTGCTGCACAGATCCGTGAGAAGTTCATCGACTTGATCCGCCGCCATGAACACCAGTATGTCCACTCGTCAGCCACCATTCCACTGGATGACCCCACGCTGCTCTTCGCCAATGCCGGAATGAACCAAtttaagcCCATCTTCCTGAACACCATTGACCCGTCCCACCCCATGGCCAGACTCCGTCGTGCTGCAAACACACAGAAGTGCATTCGTGCCGGCGGCAAACACAATGACCTCGATGATGTGGGCAAAGACGTATACCATCACACCTTCTTTGAGATGTTGGGCTCTTGGTCCTTTGGAGATTACTTCAAGCACCTGGCCTGCAAGATGGCACTGGAACTGCTGACGCAGGAGTTTGGTATTCCTATTGAACGACTCTATGTGACTTACTTTGGTGGTCATGCAGATGCAGGCCTGGAGCCTGACCTGGAGTGTAAGCAGATTTGGCTGGACCTGGGAATGGAGGAGAGCCGTATTCTGCCTGGCAGCATGAAGGATAACTTCTGGGAGATGGGGGACACTGGTCCATGTGGGCCGTGCAGTGAGATCCACTATGATCGCATTGGAGGCAGAGATGCTGCACACCTGGTCAACATGGATGACCCAAATGTGCTTGAAATCTGGAATTTGGTGTTCATCCAATTCAACAGAGAATCAGAGACCGTGCTAAAGCCTCTGCCCAAGAAGAGCATCGACACAGGGATGGGACTTGAGCGCTTGGTCTCTGTTCTACAAAACAAGATGTCTAACTATGACACTGACCTCTTCGTTCCTTATTTTGAAGCCATTCAGAAGGGCACAGGTGCAAGAGCATACACAGGAAAGGTTGGTGCAGAAGACACCGATGGCATCGATATGGCATACCGTGTCCTGGCTGATCATGCCCGCACCATTACAATCGCCTTGTCTGATGGTGGCAGACCTGACAACACTGGCAGAGGTTATGTGCTAAGGAGGATTCTGCGTCGTGCTGTGCGATACTCTCATGAAAAGCTGGGTGCACAAAGGGGCTTCTTTGCCTCATTAGTTGATGTGGTGGTTAAGTCCCTGGGTGATGCTTTTCCAGAGCTGCGGAAAGATCCTGATATGGTAAAGGATATCATCAATGAGGAAGAGGCACAGTTCCTTAAAACCCTTAGCAGAGGACGCCGCATCCTAGACCGCAAGATCCAGAGTCTCGGAGAAAGCACGACTATACCAGGTGACACGGCCTGGCTGCTGTATGACACCTACGGTTTTCCTCTGGATCTCACTGCCCTGATTGCTGAGGAAAGAGGAATGGGGGTCGATCTGCTGGCATTTGAAGAAGAGAAGAAAGCTGCTCAGttgaagtctcaAGGCAAAGGCTCTGGAGATGAAGACCACATCATGCTTGACATCTACGCCATCGATGagctcagaaataaaggtgtcgCTGCCACAGATGACAGCCCCAAATACAAGTACACTTCCGATGATAATGGCAACTATGAGTTTGAACAGGCGGTGGGCACAGTGTTGGCACTCAGGAGAGAGCGTATGTTTGTGGATGAGGTGATCACTGGTCAGGAATGCGGCGTCCTGCTTGATAAGACCTCGTTTTATGCTGAACAAGGTGGCCAGAGTTTTGATGAGGGCTACATGCTTCGAGAAAACGACTCTGCTGAGGATAGGATGGAGTTCACTGTGAAGAATACGCAGGTGCGTGGAGGATACGTGCTGCATATTGGTACGGTTTACGGCACACTGAAGGTTGGAGATCGCCTGACTCTACATGTAGATGAGGCTCGTCGTAGGCCGATCATGAGTAACCACACAGCCACACACATCCTGAACTACGGCCTGCGTTCAGTTCTCGGAGAAGCGGATCAGCGAGGCTCTTTGGTTGCTCCAGACAGGCTGCGCTTTGACTTCACAGCTAAAGGTGCAATGAGCACAGATGAAGTGCGACGCACAGAAGAGATCGCCGCTGCCATGATTGCAGACGCCAAGGGGGTTTATGCTCTGGATGCTCCTCTTGCTGCAGCTAAAGCCATTCAGGGTCTGCGAGCAGTGTTTGATGAGACATACCCTGATCCTGTAAGAGTGGTGTCTATTGGTGTCCCAGTGGAGGAACTGCTGGCTGACCCAAACAGCCCTGCAGGATCACTTACCTCCATCGAGTTCTGCGGTGGAACGCACCTGCAGAATTCAAGTCATGCTGCACCGTTTGTGATAGTGTCAGAGGAGGCCATTGCTAAAGGAATCAGGAGGATTGTGGCAGTGACTGGAGCAGAGGCTCAGAAGGCCCAGAGGAAGGCTGATGCCCTGAAGCTTAGTCTCGATGCTCTGGCAGAGAAAGTGAAAGCTCAGAGCATCCCAAACAAAGACGTCCAAAAGGAGATTGCTGATATGACAGAGTCTCTGGGCACTGCAGTGATCTCTCAGTGGCGCAAAGACGAGATGAGGGAATCTCTGAAGGGCTTGAAGAAGATCATGGATGACCTGGATCGTGCCAGCAAGGCTGATGTGCAGAAGAGGGTtctggaaaaaacaaaggagatcATCGATAGCAACCCTAACCAGCCTCTGATCGTGATGGAGATGGAGAGTGGAGCATCAGCAAAGGCTTTGAATGAGTCTCTGAAGATGCTGAAGACAAATTCACCACAGACCGCTGCTATGCTTTTCACTGTGGACAACGATGCAGGAAAAATTATCTGCTTGTGCCAAGTGCCTCAGGATGTTGCGAACCGGGGCTTGAAGGCCAGCGAGTGGGTTCAGGAAGTTTGCCCTCTGCTGGATGGAAAAGGAGGTGGTAAAGACATGTCCGCACAGGCCACGGGCAGAAACACACAATGCATACAGGAGGCTCTGCAGCTGGCATCTGAATTTGCCCGCCTCAAACTGGGTGAAAACTAA

Function

GO:

id name namespace
GO:0043039 tRNA aminoacylation biological_process
GO:0006400 tRNA modification biological_process
GO:0006412 translation biological_process
GO:0006419 alanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000049 tRNA binding molecular_function
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0004813 alanine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0016597 amino acid binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3663 Predicted to enable several functions, including ATP binding activity; catalytic activity, acting on a tRNA; and tRNA binding activity. Predicted to be involved in alanyl-tRNA aminoacylation and tRNA modification. Predicted to act upstream of or within tRNA aminoacylation and translation. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2N and developmental and epileptic encephalopathy 29. Orthologous to human AARS1 (alanyl-tRNA synthetase 1).

Ensembl:

ensembl_id ENSDART00000178875

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027287 lncRNA downstream 2228 18629066 ~ 18634673 (-) True XLOC_013358
TCONS_00026400 lncRNA downstream 81340 18551208 ~ 18555561 (-) True XLOC_013354
TCONS_00027286 lncRNA downstream 523013 18111994 ~ 18113888 (-) True XLOC_013351
TCONS_00027285 lncRNA downstream 850111 17777527 ~ 17786790 (-) True XLOC_013349
TCONS_00026394 lncRNA downstream 924234 17707958 ~ 17712667 (-) True XLOC_013348
TCONS_00026960 lncRNA upstream 54461 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027292 lncRNA upstream 288118 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026439 lncRNA upstream 630685 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00026441 lncRNA upstream 632225 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00027293 lncRNA upstream 1061662 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00026398 mRNA downstream 49156 18547023 ~ 18587745 (-) False XLOC_013354
TCONS_00026399 mRNA downstream 52062 18550418 ~ 18584839 (-) False XLOC_013354
TCONS_00026397 mRNA downstream 93543 18527170 ~ 18543358 (-) True XLOC_013353
TCONS_00026396 mRNA downstream 112277 18475674 ~ 18524624 (-) True XLOC_013352
TCONS_00026395 mRNA downstream 513932 18087260 ~ 18122969 (-) True XLOC_013350
TCONS_00026415 mRNA upstream 10297 18832226 ~ 18849916 (-) True XLOC_013364
TCONS_00026416 mRNA upstream 48696 18870625 ~ 18875308 (-) False XLOC_013365
TCONS_00026417 mRNA upstream 49474 18871403 ~ 18874921 (-) True XLOC_013365
TCONS_00026418 mRNA upstream 109555 18931484 ~ 18942098 (-) False XLOC_013367
TCONS_00026419 mRNA upstream 113152 18935081 ~ 18937485 (-) True XLOC_013367
TCONS_00026403 other downstream 59007 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026402 other downstream 59352 18577474 ~ 18577549 (-) True XLOC_013356
TCONS_00026401 other downstream 67579 18569241 ~ 18569322 (-) True XLOC_013355
TCONS_00026386 other downstream 1221312 17411870 ~ 17415589 (-) False XLOC_013343
TCONS_00026341 other downstream 2761121 15875662 ~ 15875780 (-) True XLOC_013321
TCONS_00026421 other upstream 173318 18995247 ~ 18999255 (-) False XLOC_013369
TCONS_00026429 other upstream 288118 19110047 ~ 19111751 (-) False XLOC_013371
TCONS_00026433 other upstream 552910 19374839 ~ 19374955 (-) True XLOC_013373
TCONS_00026434 other upstream 601082 19423011 ~ 19423128 (-) True XLOC_013374
TCONS_00026436 other upstream 629653 19451582 ~ 19451651 (-) True XLOC_013376

Expression Profile

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