RNA id: TU8701


Basic Information

Item Value
RNA id TU8701
length 424
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G7072
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8431954 ~ 8432377 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaacctcaaacagtcacactccaaactccactacggccaagaccaaagagctgtcaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagctcggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagactactgataatctccctcgatctggggctccacgcaagatctcaccccgtggggtcaaaatgatcacaagaaccacacggggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagtaacacactacgccgccagggactcaaatcctgcagtgccagacgtgtccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8695 lncRNA upstream 5510 8426233 ~ 8426444 (+) True G7066
TU8634 lncRNA upstream 58516 8371174 ~ 8373438 (+) True G7009
TU8626 lncRNA upstream 125553 8305765 ~ 8306401 (+) True G7001
TU8610 lncRNA upstream 156527 8274666 ~ 8275427 (+) True G6985
TU8608 lncRNA upstream 157713 8272936 ~ 8274241 (+) True G6983
TU8702 lncRNA downstream 87 8432464 ~ 8432705 (+) True G7073
TU8711 lncRNA downstream 11455 8443832 ~ 8444041 (+) True G7081
TU8717 lncRNA downstream 13978 8446355 ~ 8446991 (+) True G7085
TU8722 lncRNA downstream 36328 8468705 ~ 8469121 (+) True G7089
TU8724 lncRNA downstream 42468 8474845 ~ 8475081 (+) True G7091
XM_036989291.1 mRNA upstream 160222 8255873 ~ 8271732 (+) False LOC110505168
XM_036989290.1 mRNA upstream 200388 8229189 ~ 8231566 (+) False LOC110501328
XR_005039281.1 mRNA upstream 206687 8224365 ~ 8225267 (+) True LOC118943893
XM_036989287.1 mRNA upstream 218067 8209333 ~ 8213887 (+) True LOC110497697
XM_021611929.2 mRNA upstream 232288 8192682 ~ 8199666 (+) True LOC110529566
XM_036987202.1 mRNA downstream 54277 8486654 ~ 8494344 (+) True LOC110529807
XM_036989292.1 mRNA downstream 170348 8602725 ~ 8612667 (+) False LOC110515166
LOC110532690 mRNA downstream 192509 8624886 ~ 8634174 (+) True LOC110532690
XM_036988195.1 mRNA downstream 234792 8667169 ~ 8674156 (+) False LOC110519734
XM_036988230.1 mRNA downstream 234793 8667170 ~ 8693760 (+) True LOC110519734
TU8596 other upstream 176076 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 201719 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 394800 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 546047 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 706345 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 1026571 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 1551398 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 1553005 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 1708867 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 3044287 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile