RNA id: TCONS_00026407


Basic Information

Item Value
RNA id TCONS_00026407
length 1302
RNA type mRNA
GC content 0.51
exon number 9
gene id XLOC_013359
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18636273 ~ 18821929 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACTCTTCACTGACTGCTGCACAGATCCGTGAGAAGTTCATCGACTTCTTCCGCCGCCATGAACACCAGTATGTCCACTCGTCAGCCACCATTCCACTGGATGACCCCACGCTGCTCTTCGCCAATGCCGGAATGAACCAAtttaagcCCATCTTCCTGAACACCATTGACCCGTCCCACCCCATGGCCAGACTCCGTCGTGCTGCAAACACACAGAAGTGCATTCGTGCCGGCGGCAAACACAATGACCTCGATGATGTGGGCAAAGACGTATACCATCACACCTTCTTTGAGATGTTGGGCTCTTGGTCCTTTGGAGATTACTTCAAGCACCTGGCCTGCAAGATGGCACTGGAACTGCTGACGCAGGAGTTTGGTATTCCTATTGAACGACTCTATGTGACTTACTTTGGTGGTCATGCAGATGCAGGCCTGGAGCCTGACCTGGAGTGTAAGCAGATTTGGCTGGACCTGGGAATGGAGGAGAGCCGTATTCTGCCTGGCAGCATGAAGGATAACTTCTGGGAGATGGGGGACACTGGTCCATGTGGGCCGTGCAGTGAGATCCACTATGATCGCATTGGAGGCAGAGATGCTGCACACCTGGTCAACATGGATGACCCAAATGTGCTTGAAATCTGGAATTTGGTGTTCATCCAATTCAACAGAGAATCAGAGACCGTGCTAAAGCCTCTGCCCAAGAAGAGCATCGACACAGGGATGGGACTTGAGCGCTTGGTCTCTGTTCTACAAAACAAGATGTCTAACTATGACACTGACCTCTTCGTTCCTTATTTTGAAGCCATTCAGAAGGGCACAGGTGCAAGAGCATACACAGGAAAGGTTGGTGCAGAAGACACCGATGGCATCGATATGGCATACCGTGTCCTGGCTGATCATGCCCGCACCATTACAATCGCCTTGTCTGATGGTGGCAGACCTGACAACACTGGCAGAGGTTATGTGCTAAGGAGGATTCTGCGTCGTGCTGTGCGATACTCTCATGAAAAGCTGGGTGCACAAAGGGGCTTCTTTGCCTCATTAGTTGATGTGGTGGTTAAGTCCCTGGGTGATGCTTTTCCAGAGCTGCGGAAAGATCCTGATATGGTAAAGGATATCATCAATGAGGAAGAGGCACAGTTCCTTAAAACCCTTAGCAGAGGACGCCGCATCCTAGACCGCAAGATCCAGAGTCTCGGAGAAAGCACGACTATACCAGaggGGATGCTGTTTACTGGTGCAAGCTCACTTCACCTGCACATCAACGGCGAGCAAGAGGTTGGCGACAGAGTAAAATGA

Function

GO:

id name namespace
GO:0043039 tRNA aminoacylation biological_process
GO:0006400 tRNA modification biological_process
GO:0006412 translation biological_process
GO:0006419 alanyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000049 tRNA binding molecular_function
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0004813 alanine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0016597 amino acid binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3663 Predicted to enable several functions, including ATP binding activity; catalytic activity, acting on a tRNA; and tRNA binding activity. Predicted to be involved in alanyl-tRNA aminoacylation and tRNA modification. Predicted to act upstream of or within tRNA aminoacylation and translation. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2N and developmental and epileptic encephalopathy 29. Orthologous to human AARS1 (alanyl-tRNA synthetase 1).

Ensembl:

ensembl_id ENSDART00000076695

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027287 lncRNA downstream 22307 18629066 ~ 18634673 (-) True XLOC_013358
TCONS_00026400 lncRNA downstream 101419 18551208 ~ 18555561 (-) True XLOC_013354
TCONS_00027286 lncRNA downstream 543092 18111994 ~ 18113888 (-) True XLOC_013351
TCONS_00027285 lncRNA downstream 870190 17777527 ~ 17786790 (-) True XLOC_013349
TCONS_00026394 lncRNA downstream 944313 17707958 ~ 17712667 (-) True XLOC_013348
TCONS_00027288 lncRNA upstream 51396 18713973 ~ 18727032 (-) False XLOC_013361
TCONS_00026409 lncRNA upstream 51396 18713973 ~ 18727032 (-) True XLOC_013361
TCONS_00027289 lncRNA upstream 81885 18744462 ~ 18749405 (-) False XLOC_013362
TCONS_00027290 lncRNA upstream 124807 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00027291 lncRNA upstream 153077 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00026398 mRNA downstream 69235 18547023 ~ 18587745 (-) False XLOC_013354
TCONS_00026399 mRNA downstream 72141 18550418 ~ 18584839 (-) False XLOC_013354
TCONS_00026397 mRNA downstream 113622 18527170 ~ 18543358 (-) True XLOC_013353
TCONS_00026396 mRNA downstream 132356 18475674 ~ 18524624 (-) True XLOC_013352
TCONS_00026395 mRNA downstream 534011 18087260 ~ 18122969 (-) True XLOC_013350
TCONS_00026413 mRNA upstream 140962 18803539 ~ 18850302 (-) False XLOC_013364
TCONS_00026412 mRNA upstream 140962 18803539 ~ 18850302 (-) False XLOC_013364
TCONS_00026415 mRNA upstream 169649 18832226 ~ 18849916 (-) True XLOC_013364
TCONS_00026416 mRNA upstream 208048 18870625 ~ 18875308 (-) False XLOC_013365
TCONS_00026417 mRNA upstream 208826 18871403 ~ 18874921 (-) True XLOC_013365
TCONS_00026403 other downstream 79086 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026402 other downstream 79431 18577474 ~ 18577549 (-) True XLOC_013356
TCONS_00026401 other downstream 87658 18569241 ~ 18569322 (-) True XLOC_013355
TCONS_00026386 other downstream 1241391 17411870 ~ 17415589 (-) False XLOC_013343
TCONS_00026341 other downstream 2781200 15875662 ~ 15875780 (-) True XLOC_013321
TCONS_00026408 other upstream 33630 18696207 ~ 18701764 (-) True XLOC_013360
TCONS_00026410 other upstream 81885 18744462 ~ 18749405 (-) True XLOC_013362
TCONS_00026411 other upstream 124807 18787384 ~ 18793265 (-) True XLOC_013363
TCONS_00026414 other upstream 153077 18815654 ~ 18821370 (-) True XLOC_013359
TCONS_00026421 other upstream 332670 18995247 ~ 18999255 (-) False XLOC_013369

Expression Profile

//