RNA id: TU8997


Basic Information

Item Value
RNA id TU8997
length 2377
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id G7313
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8486720 ~ 8494344 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGGTtggaatttatttatttgatctgtctgtaaacaaggTGATAAATTAATTTATGGCATTTCTTGGTTTAGGCATATGAAGTGTTAAAGAGACTATCCCAAGTGTAAGAAAAGAAGTGTCAGGAAAGTCAGCAAATGAAGGTTTTaattagtacacacacacacacacaccccacaaggCCTGAACATTGGCActgatgcaaaaaaaaaaaaaaaaaagtgccaaTGAAATGACTCCTTCCTGGGCAGCTGTTAAAAATCCATCATACAATAGAAATTGATGTTTCAACATTATGGTACAGGATACACAGCTTTGGTATACAAGTTTCCACAAGACAATCAAAAGAGTTTTTATTCCAACCAATCCCGTCTCCCATTTCAATTGTGTAATTtctactttatatatatattctttttttttatttttttttttaaagttcttTTCAAATTGGACATTACATTTAAGTACAGAGCTTGAAAAGAAAGTTTGATACCATATCTTAGTTGAACACGAGTACAAGGCCATTTATTCCACAGTCGTTTCTTCACACAGCATGGGTTTAGAAATGCAGTAATTCATTTCTTTAATAAAAAATCTGAAGTTGTCAAATTATGACCGCTCGATTTCATCCACCGCAAACCCTCCCTCCCTTGTGCCTTCAACAGAAAGATGTGGTTTTACATTAGTGTTGTTTTGCCTTCAGCGGGAAAGATGAGGATAGAAGGCATCCTTCAATGATTTAGAGCAATTGTATATTTACCCAAAGCTGTCACTAAAATTGGTCCTATGAAAATGTCAAACTGGATGTATCTACTGTCCAAAATGGCagcctttaaaaaataaaacaaataaaggaAATGCATTACAGGAGCTGGCAAACAGTTTTAAGTGTCTACGCCATTGTAACGATGGAATGTCCATAATGGGGTTCATGTAGTCATGAAGAGGACATGGAAGAGATTCTGCCTGCATCCACCATGTCGGTTTTGCCTTCTGACTCAATCAATACCAGAACTGATAAGCCTGCCATGACTGCATTGAAGCACAACCCCCCCCCAATCCGGTAGAGTAGTGTGGctcagagagggagatacaggggacTTTAGGGTGTAGTGATTGGTTAATGGAGTGTTCCTCCCGTGTACTGATGTAGTGTCACCTATGGACAAAcaggaagagggggaaggagcTACAGATATTTGGCAGGAGTtacagggaggggacagagggaacAACAGTATTTCAGTAGCCTCAAAGATATGCAtgcgccccccccaaaaaaaataaacatgctCTAGAAAAGGAAGACAATGAGCTTGGTTACAGCTCAAGTGCTCCAAAGGCATCGGCTGCTCAAGAGAACTTCCGGGGCACCATCACACGAAATCTCAGTTCATCAATTTTAGGTTTCCTTCACTTTattcgtccccccccccccccccactgagcATTGGCCAGAATGGTGCAAGGGTGTTTTTTTTTAcggtttttttttttaacaagtatAGATTTGTCACAATGTCCTGTTAACAACAtgctcatttttttttttttttaactatggTGCAACAGTGCTAGAATGGGATTGAGTACACAGTGTGAATGCATCAAGATGACTGGGAAAGAACAAGAGAAAAGGGGAATcaaaccccccccaccccaaaaaaagggggggggacGACAAAAGGAGGGTCTGGGGAGAAAAGTAAGCAACTACCAACTAGAACTGGAAGTGTGTGTTATGGGTGAGCTGCTAGGTGGCTGGGCCGATGCTCCTTTAGTATCCAGACTTCCTCAGGTACTCGGCCATTGTATACGCTTTCTTGTTGAGCTGTCCTCCATGGACACCTTCCTTTCCCATGACTAAAACCAACGCTTTGCCGGCTTTGCCTATGGAAACGTTATATGTGGGCTCTCCTCCTTGACTCTTTGTCCTGATGTCCATTGTCCAGTCCCCGTCGGCGTGGAGGCTGTCTCTGATGACGGAGCATTTCTTTTGGCCTAGGGTCAGCCCACCGCAGAAGAAGGCTTCTCGGTCCTTTCCTACGATGATGTCGATTTCTTCAACCGTTATGTTAACAAATGTACCACCGGGAAACGATGCCCAGACATATTTGGAGTCCGTGTAACCAACAATGGCGGAGTCCTGGCAGCTGCCATCGGCCATCAGGTTATCCACGTAGCCTTGCCAGGACATACTTGCGTATTAGTTCaaatgtggaaatatatatagatttttttttaaatatatatatgtgaCAGGTACTCTAGAGCAACAGTGCCGGTTCTATAAGCTGTATTTTCTTTCGGTGATTTTGAAGTCTCCAACAATTCCCCGGCTCCGTCTCGTCCCGGCTGTCTTCTGGGTTTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9012 lncRNA downstream 33737 8446367 ~ 8452983 (-) True G7327
TU9009 lncRNA downstream 43377 8443144 ~ 8443343 (-) True G7325
TU9005 lncRNA downstream 47166 8439267 ~ 8439554 (-) True G7321
TU8990 lncRNA downstream 56005 8430511 ~ 8430715 (-) True G7310
TU8983 lncRNA downstream 64860 8421574 ~ 8421860 (-) True G7303
TU9029 lncRNA upstream 26965 8521309 ~ 8571227 (-) True G7344
TU9044 lncRNA upstream 47382 8541726 ~ 8542528 (-) True G7357
TU9076 lncRNA upstream 116027 8610371 ~ 8610799 (-) True G7388
TU9078 lncRNA upstream 116788 8611132 ~ 8611777 (-) True G7390
TU9080 lncRNA upstream 117618 8611962 ~ 8613086 (-) True G7392
XM_036986955.1 mRNA downstream 67670 8372593 ~ 8419050 (-) False LOC110529747
XM_036986903.1 mRNA downstream 145633 8274638 ~ 8341087 (-) True LOC110529671
XM_036986914.1 mRNA downstream 145634 8274638 ~ 8341086 (-) False LOC110529671
XM_036986834.1 mRNA downstream 304589 8177281 ~ 8182131 (-) True LOC118965595
XM_021611230.2 mRNA downstream 339217 8140168 ~ 8147503 (-) True dynlt2b
XM_036987109.1 mRNA upstream 1581 8495925 ~ 8580377 (-) False LOC110508833
XM_036987041.1 mRNA upstream 1581 8495925 ~ 8580590 (-) True LOC110508833
XM_036988127.1 mRNA upstream 124436 8618780 ~ 8623559 (-) False LOC110530501
XM_036988068.1 mRNA upstream 124436 8618780 ~ 8625020 (-) False LOC110530501
XM_036987914.1 mRNA upstream 149652 8643996 ~ 8648869 (-) True LOC118966038
TU8936 other downstream 111156 8330314 ~ 8375564 (-) False LOC110529747
TU8825 other downstream 302787 8164276 ~ 8183933 (-) False G7184
TU8827 other downstream 302787 8182308 ~ 8183933 (-) True G7184
TU8401 other downstream 447257 8039179 ~ 8039463 (-) True G6810
TU8272 other downstream 601720 7884343 ~ 7885000 (-) True G6706
TU9788 other upstream 658926 9153270 ~ 9153947 (-) True G7985
TU9756 other upstream 687111 9181455 ~ 9183034 (-) False G7965
TU9757 other upstream 687111 9181455 ~ 9183034 (-) False G7965
TU10337 other upstream 1073597 9567941 ~ 9590586 (-) True G8455
TU12268 other upstream 3068393 11562737 ~ 11563125 (-) True G10263

Expression Profile