RNA id: TCONS_00026408


Basic Information

Item Value
RNA id TCONS_00026408
length 759
RNA type unprocessed_pseudogene
GC content 0.49
exon number 5
gene id XLOC_013360
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18696207 ~ 18701764 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACTCTTCACTGACTGCTGCACAGATCCGTGAGAAGTTCATCGACTTCTTCCGCCGCCATGAACACCAGTATGTCCACTCGTCagccaccatatatatatatatatacaaaaatgtgAATGTATAATGGAGGAGAGCCGTATTCTGCCTGGCAGCATGAAGGATAACTTCTGGGAGATGGGGGACACTGGTCCATGTGGGCCGTGCAGTGAGATCCACTATGATCGCATTGGAGGCAGAGATGCTGCACACCTGGTCAACATGGATGACCCAAATGTGCTTGAAATCTGGAATTTGGTTCATCCAATTCAACAGAGAATCAGAGACCGTGCTAAAGCCTCTGCCCAAGAAGAGCATCGACACAGGGATGGGACTTGAGCGCTTGGTCTCTGTTCTACAAAACAAGATGTCTAACTATGACACTGACCTCTTCGTTCCTTATTTTGAAGCCATTCAGAAGGGCACAGGTGCAAGAGCATACACAGGAAAGGTTGGTGCAGAAGACACCGATGGCATCGATATGGCATACCGTGTCCTGGCTGATCATGCCCGCACCATTACAATCGCCTTGTATGATGGTGGCAGACCTGACAACACTGGCAGAGGGGTGATGCTTTTCCAGAGCTGCGGAAAGATCCTGATATGGTAAAGGATATCATCAATGAGGAAGAGGCACAGTTCCTTAAAACCCTCAGCAGAGGACGCCGCATCCTAGACCGCAAGATCCAGAGTCTCGGAGAAAGCACAACTATACCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140538

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027287 lncRNA downstream 61534 18629066 ~ 18634673 (-) True XLOC_013358
TCONS_00026400 lncRNA downstream 140646 18551208 ~ 18555561 (-) True XLOC_013354
TCONS_00027286 lncRNA downstream 582319 18111994 ~ 18113888 (-) True XLOC_013351
TCONS_00027285 lncRNA downstream 909417 17777527 ~ 17786790 (-) True XLOC_013349
TCONS_00026394 lncRNA downstream 983540 17707958 ~ 17712667 (-) True XLOC_013348
TCONS_00027288 lncRNA upstream 12209 18713973 ~ 18727032 (-) False XLOC_013361
TCONS_00026409 lncRNA upstream 12209 18713973 ~ 18727032 (-) True XLOC_013361
TCONS_00027289 lncRNA upstream 42698 18744462 ~ 18749405 (-) False XLOC_013362
TCONS_00027290 lncRNA upstream 85620 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00027291 lncRNA upstream 113890 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00026405 mRNA downstream 28791 18636273 ~ 18667416 (-) False XLOC_013359
TCONS_00026404 mRNA downstream 28791 18636273 ~ 18667416 (-) False XLOC_013359
TCONS_00026407 mRNA downstream 33630 18656980 ~ 18662577 (-) False XLOC_013359
TCONS_00026398 mRNA downstream 108462 18547023 ~ 18587745 (-) False XLOC_013354
TCONS_00026399 mRNA downstream 111368 18550418 ~ 18584839 (-) False XLOC_013354
TCONS_00026413 mRNA upstream 101775 18803539 ~ 18850302 (-) False XLOC_013364
TCONS_00026412 mRNA upstream 101775 18803539 ~ 18850302 (-) False XLOC_013364
TCONS_00026415 mRNA upstream 130462 18832226 ~ 18849916 (-) True XLOC_013364
TCONS_00026416 mRNA upstream 168861 18870625 ~ 18875308 (-) False XLOC_013365
TCONS_00026417 mRNA upstream 169639 18871403 ~ 18874921 (-) True XLOC_013365
TCONS_00026403 other downstream 118313 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026402 other downstream 118658 18577474 ~ 18577549 (-) True XLOC_013356
TCONS_00026401 other downstream 126885 18569241 ~ 18569322 (-) True XLOC_013355
TCONS_00026386 other downstream 1280618 17411870 ~ 17415589 (-) False XLOC_013343
TCONS_00026341 other downstream 2820427 15875662 ~ 15875780 (-) True XLOC_013321
TCONS_00026410 other upstream 42698 18744462 ~ 18749405 (-) True XLOC_013362
TCONS_00026411 other upstream 85620 18787384 ~ 18793265 (-) True XLOC_013363
TCONS_00026414 other upstream 113890 18815654 ~ 18821370 (-) True XLOC_013359
TCONS_00026421 other upstream 293483 18995247 ~ 18999255 (-) False XLOC_013369
TCONS_00026429 other upstream 408283 19110047 ~ 19111751 (-) False XLOC_013371

Expression Profile

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