RNA id: TCONS_00026410


Basic Information

Item Value
RNA id TCONS_00026410
length 534
RNA type unprocessed_pseudogene
GC content 0.50
exon number 4
gene id XLOC_013362
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18744462 ~ 18749405 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACTCTTCACTGACTGCTGCACAGATCCGTGAGAAGTTCATCGACTTCTTCCGCTGCCATGAACACCAGTATGTCCACTCGTCAGCCACCATTCCACTGGATGACCCCACGCTGCTCTTCGCCAATGCCGGAATGAACCAAAATGGAGGAGAGCCGTATTCTGCCTGGCAGCATGAAGGATAACTTCTGGGAGATGGGGGACACTGGTCCATGTGGGCCGTGCAGTGAGATCCACTATGATCACATTGGAGGCAGAGATGCTGCACACCTGGTCAACATGGATGACCCAAATAAGCTTGAAATCTGGAATTTGGTGTTCATCCAATTCAACAGAGAATCAGAGACCGTGCTTAAGCCTCTGCCCAAGAAGAGCATCAACAGGTGATGCTTTTCCAGAGCTGCTGAAAGATCCTGATATGGTAAAGGATATCATCAATGAGAAAGAGGCACAGTTCCTTAAAACCCTCAGCAGAGGACGCCGCATCCTAGACCGCAAGATCCAGAGTCTCGGAGAAAGCACAACTATACCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000139716

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027288 lncRNA downstream 17430 18713973 ~ 18727032 (-) False XLOC_013361
TCONS_00026409 lncRNA downstream 17430 18713973 ~ 18727032 (-) True XLOC_013361
TCONS_00027287 lncRNA downstream 109789 18629066 ~ 18634673 (-) True XLOC_013358
TCONS_00026400 lncRNA downstream 188901 18551208 ~ 18555561 (-) True XLOC_013354
TCONS_00027286 lncRNA downstream 630574 18111994 ~ 18113888 (-) True XLOC_013351
TCONS_00027290 lncRNA upstream 37979 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00027291 lncRNA upstream 66249 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00026960 lncRNA upstream 126985 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027292 lncRNA upstream 360642 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026439 lncRNA upstream 703209 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00026405 mRNA downstream 77046 18636273 ~ 18667416 (-) False XLOC_013359
TCONS_00026404 mRNA downstream 77046 18636273 ~ 18667416 (-) False XLOC_013359
TCONS_00026407 mRNA downstream 81885 18656980 ~ 18662577 (-) False XLOC_013359
TCONS_00026398 mRNA downstream 156717 18547023 ~ 18587745 (-) False XLOC_013354
TCONS_00026399 mRNA downstream 159623 18550418 ~ 18584839 (-) False XLOC_013354
TCONS_00026413 mRNA upstream 54134 18803539 ~ 18850302 (-) False XLOC_013364
TCONS_00026412 mRNA upstream 54134 18803539 ~ 18850302 (-) False XLOC_013364
TCONS_00026415 mRNA upstream 82821 18832226 ~ 18849916 (-) True XLOC_013364
TCONS_00026416 mRNA upstream 121220 18870625 ~ 18875308 (-) False XLOC_013365
TCONS_00026417 mRNA upstream 121998 18871403 ~ 18874921 (-) True XLOC_013365
TCONS_00026408 other downstream 42698 18696207 ~ 18701764 (-) True XLOC_013360
TCONS_00026403 other downstream 166568 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026402 other downstream 166913 18577474 ~ 18577549 (-) True XLOC_013356
TCONS_00026401 other downstream 175140 18569241 ~ 18569322 (-) True XLOC_013355
TCONS_00026386 other downstream 1328873 17411870 ~ 17415589 (-) False XLOC_013343
TCONS_00026411 other upstream 37979 18787384 ~ 18793265 (-) True XLOC_013363
TCONS_00026414 other upstream 66249 18815654 ~ 18821370 (-) True XLOC_013359
TCONS_00026421 other upstream 245842 18995247 ~ 18999255 (-) False XLOC_013369
TCONS_00026429 other upstream 360642 19110047 ~ 19111751 (-) False XLOC_013371
TCONS_00026433 other upstream 625434 19374839 ~ 19374955 (-) True XLOC_013373

Expression Profile

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