RNA id: TCONS_00027290


Basic Information

Item Value
RNA id TCONS_00027290
length 1178
lncRNA type intronic
GC content 0.42
exon number 11
gene id XLOC_013363
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18787384 ~ 18793265 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACTCTTCACTGACTGCTGCACAGATCCGTGAGAAGTTCATCGACTTCTTCCGCCGCCATGAACACCAGTATGTCCACTCGTCAGCCACCATTCCACTGGATGACCCCACGCTGCTCTTCGCCAATGCCGGAATGAATATTACATGtaaatgttatcattattttgatagtttaaactgtagaacacaaaataaattgttggaaactggtagcttattaaGATATTACTTTCagtttgtgaatgtaaaaggaAGGCAGAATTTCACCGTAAATTGCAATATTAAAAAGAAGAAATTATCACTTTTTTTATTGTCATCTGTcttttttatagtttatagTAGATTATCTATATGGGTTAAAATGACCgattttaattataatacaagTTGTAGAATTGATGTAAATTTGTTTATATTCTTTCTGTATCAGAATGTAAGAGAGCCGTATTCTGCCTGGCAGCATGAAGGATAACTTCTGGGAGATGGGGGACACTGGTCCATGTGGGCCGTGCAGTGAGATCCACTATGATCGCATTGGAGGCAGAGATGCTGCACACCTGGTCAACATGGATGACCCAAATGAGCTTGAAATCTGGAATTTGGTGTTCATCCAATTCAACAGAGAATCAGAGACCGTGCTTAAGCCTCTTTCCAAGAAGAGCATCGACACAGGGATGGGACTTGAGCGCTTGGTCTCTGTTCTACAAAACAAGATGTCTAACTACGACACTGACCTCTTCGTTCCTTATTTTGAAGCCATTCAGAAGGGCACAGGTGCAAGAGCATACACAGGAAAGGTTAGTGCAGAAGACACCGATGGCATCGATATGGCATACCGTGTCCTGGCTGATCATGCCCGCACCATTACAATCGCCTTGTATGATGGTGGCAGACCTGACAACACTGGCAGAGGGTCTTTTATTTTCCCAAATGTGCATAGAATATTGTGCAGATTAAGTTTCTTCAAACATTTTACAAaggagtgtttatttaaaaaagtgtgcccacTTTATTGCTCTTTTCAGGGTGATGCTTTTCCAGAGCTGCGGAAAGATCCTTATATGGTAAAGGATATCATCAATGAGGAAGAGGCACAGTTCCTTAAAACCCTCAGCAGAGGACGCCGCATCCTAGACCGCAAGATCCAGAGTCTCGGAGAAAGCACAACTATACCAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027289 lncRNA downstream 37979 18744462 ~ 18749405 (-) False XLOC_013362
TCONS_00027288 lncRNA downstream 60352 18713973 ~ 18727032 (-) False XLOC_013361
TCONS_00026409 lncRNA downstream 60352 18713973 ~ 18727032 (-) True XLOC_013361
TCONS_00027287 lncRNA downstream 152711 18629066 ~ 18634673 (-) True XLOC_013358
TCONS_00026400 lncRNA downstream 231823 18551208 ~ 18555561 (-) True XLOC_013354
TCONS_00027291 lncRNA upstream 22389 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00026960 lncRNA upstream 83125 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027292 lncRNA upstream 316782 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026439 lncRNA upstream 659349 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00026441 lncRNA upstream 660889 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00026405 mRNA downstream 119968 18636273 ~ 18667416 (-) False XLOC_013359
TCONS_00026404 mRNA downstream 119968 18636273 ~ 18667416 (-) False XLOC_013359
TCONS_00026407 mRNA downstream 124807 18656980 ~ 18662577 (-) False XLOC_013359
TCONS_00026398 mRNA downstream 199639 18547023 ~ 18587745 (-) False XLOC_013354
TCONS_00026399 mRNA downstream 202545 18550418 ~ 18584839 (-) False XLOC_013354
TCONS_00026413 mRNA upstream 10274 18803539 ~ 18850302 (-) False XLOC_013364
TCONS_00026412 mRNA upstream 10274 18803539 ~ 18850302 (-) False XLOC_013364
TCONS_00026415 mRNA upstream 38961 18832226 ~ 18849916 (-) True XLOC_013364
TCONS_00026416 mRNA upstream 77360 18870625 ~ 18875308 (-) False XLOC_013365
TCONS_00026417 mRNA upstream 78138 18871403 ~ 18874921 (-) True XLOC_013365
TCONS_00026410 other downstream 37979 18744462 ~ 18749405 (-) True XLOC_013362
TCONS_00026408 other downstream 85620 18696207 ~ 18701764 (-) True XLOC_013360
TCONS_00026403 other downstream 209490 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026402 other downstream 209835 18577474 ~ 18577549 (-) True XLOC_013356
TCONS_00026401 other downstream 218062 18569241 ~ 18569322 (-) True XLOC_013355
TCONS_00026414 other upstream 22389 18815654 ~ 18821370 (-) True XLOC_013359
TCONS_00026421 other upstream 201982 18995247 ~ 18999255 (-) False XLOC_013369
TCONS_00026429 other upstream 316782 19110047 ~ 19111751 (-) False XLOC_013371
TCONS_00026433 other upstream 581574 19374839 ~ 19374955 (-) True XLOC_013373
TCONS_00026434 other upstream 629746 19423011 ~ 19423128 (-) True XLOC_013374

Expression Profile

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