RNA id: TU10018


Basic Information

Item Value
RNA id TU10018
length 287
lncRNA type read_through
GC content 0.38
exon number 2
gene id G8191
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9706196 ~ 9785562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaggcaatcaggatagataataaacacagtaGCAGCAGCTAGTGTGAAAGTCGGTCAGTGTcacagtgaatgtgtgggtagagtgtagTGAATGTGCATCGAGCCAATTCAAGAGAGTCAGTGGAAAACAATTAGAAAAATACATCAATaacaaagggggtcaatgcaaatagtgcaggtggccatttaattaacgttcagcagtctaatggcttgggggtagaagctgttcagcagtctaatgacttgggggtagaagctgttcagcagtctaatgacttggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10009 lncRNA upstream 7653 9676218 ~ 9698543 (+) True LOC118937357
TU10001 lncRNA upstream 16092 9688910 ~ 9690104 (+) True G8176
TU9968 lncRNA upstream 28715 9526496 ~ 9677481 (+) True G8144
TU9990 lncRNA upstream 58383 9594848 ~ 9647813 (+) True LOC118937346
TU9988 lncRNA upstream 82292 9623067 ~ 9623904 (+) True LOC118937363
TU10034 lncRNA downstream 8281 9793843 ~ 9933555 (+) True G8200
TU10063 lncRNA downstream 73842 9859404 ~ 9915393 (+) True G8225
TU10069 lncRNA downstream 106855 9892417 ~ 9931446 (+) True G8231
TU10072 lncRNA downstream 122244 9907806 ~ 9925501 (+) True LOC118937372
TU10076 lncRNA downstream 142277 9927839 ~ 9947260 (+) True G8238
XM_036934608.1 mRNA upstream 254 9677794 ~ 9705942 (+) False LOC118937070
XM_036934605.1 mRNA upstream 254 9678766 ~ 9705942 (+) False LOC118937070
XM_036934688.1 mRNA upstream 254 9699155 ~ 9705942 (+) True LOC118937070
XM_036934628.1 mRNA upstream 882 9678770 ~ 9705314 (+) False LOC118937070
XM_036934606.1 mRNA upstream 19954 9678770 ~ 9686242 (+) False LOC118937070
XM_036989299.1 mRNA downstream 14111 9799673 ~ 9802451 (+) True LOC118966328
XM_036936178.1 mRNA downstream 16894 9802456 ~ 9806644 (+) True LOC118936500
XM_036989300.1 mRNA downstream 33655 9819217 ~ 9826268 (+) True LOC110515163
XM_036938257.1 mRNA downstream 40447 9826009 ~ 9828460 (+) True LOC110511657
XM_036934788.1 mRNA downstream 51966 9837528 ~ 9845115 (+) False LOC110515172
TU9946 other upstream 246243 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1450318 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1475961 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1669042 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1820289 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 198213 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 199820 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 355682 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1691102 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3453051 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile