RNA id: TU10034


Basic Information

Item Value
RNA id TU10034
length 389
lncRNA type read_through
GC content 0.44
exon number 3
gene id G8200
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9772064 ~ 9933555 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtactctgctgtactctactgtactctgctgtgctctgtctgctgtactctgctgtactctgctgtgctctactgtactctactgcactctgtctgctgtactctgctgtactctgctgtgctctactgtactctgctgtactctgtctgctgtactctgctgtactctgctgtgctctactgtactctactgtactctgctgtgctctactgtactctactgtagtctgctgtgctctactgtactctactgtactctgctgtactatgtctgctgtactttactgtagtctgctgtgctctactgtactatacaccaCTGGGTATACAGACTCTTCAGATACTGTTAGCGAACACCAGACTGAGGTTGAGGCGATTACATGGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9982 lncRNA upstream 5668 9575836 ~ 9788175 (+) True G8158
TU10018 lncRNA upstream 8281 9706196 ~ 9785562 (+) False G8191
TU10019 lncRNA upstream 67247 9706196 ~ 9726596 (+) True G8191
TU10009 lncRNA upstream 95300 9676218 ~ 9698543 (+) True LOC118937357
TU10001 lncRNA upstream 103739 9688910 ~ 9690104 (+) True G8176
TU10105 lncRNA downstream 74455 10008010 ~ 10008505 (+) True G8263
TU10106 lncRNA downstream 75465 10009020 ~ 10009350 (+) True G8264
TU10107 lncRNA downstream 77461 10011016 ~ 10011230 (+) True G8265
TU10108 lncRNA downstream 78295 10011850 ~ 10012067 (+) True G8266
TU10094 lncRNA downstream 117486 10051041 ~ 10053076 (+) True G8253
XM_036936625.1 mRNA upstream 13676 9757938 ~ 9780167 (+) False LOC118937415
XM_036936590.1 mRNA upstream 14464 9757938 ~ 9779379 (+) False LOC118937415
XM_036936517.1 mRNA upstream 26153 9758134 ~ 9767690 (+) True LOC118937415
XM_036936244.1 mRNA upstream 37574 9741905 ~ 9756269 (+) False LOC110510916
XM_036936289.1 mRNA upstream 37574 9742345 ~ 9756269 (+) False LOC110510916
XM_036989302.1 mRNA downstream 3610 9937165 ~ 9945082 (+) True LOC118966382
XM_036935035.1 mRNA downstream 23123 9956678 ~ 9964323 (+) False LOC118937321
XM_036935087.1 mRNA downstream 23123 9956678 ~ 9964323 (+) False LOC118937321
XM_036935135.1 mRNA downstream 24156 9957711 ~ 9964323 (+) False LOC118937321
XM_036935193.1 mRNA downstream 24156 9957711 ~ 9964323 (+) True LOC118937321
TU9946 other upstream 333890 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1537965 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1563608 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1756689 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1907936 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 50220 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 51827 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 207689 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1543109 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3305058 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile