RNA id: TU10105


Basic Information

Item Value
RNA id TU10105
length 496
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G8263
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10008010 ~ 10008505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcagcagcagtagtagcagtagtagcagcagtagcagtagtagcagcagcagtagcattagtagcagcagcagtagcattagtagtagtagcagcagcagtagtagtagtagtagtagtagtagtagtagcagtagcagcagtagcagtagtagtagtagcagcagcagtagtagcagtagtagcagcagtagcagtagtagtagtagcagcagcagtagtagcagtagtagcagcagtagcagcagtagcagtagtagtagtagtagtagtagcagcagcagtagtagcagtagtagtagtagtagcagtagtagtagcagcagcagtagtagcagcagtagcagcagtagcagtagtagtagtagcagcagcagtagtagcagtagtagcagcagtagcagtagtagcagcagcagtagcattagtagcagcagcagtagcattagtagtagtagcagcagcagtagtagtagtagtagtagtagtagtagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10076 lncRNA upstream 60750 9927839 ~ 9947260 (+) True G8238
TU10034 lncRNA upstream 74455 9793843 ~ 9933555 (+) True G8200
TU10069 lncRNA upstream 76564 9892417 ~ 9931446 (+) True G8231
TU10072 lncRNA upstream 82509 9907806 ~ 9925501 (+) True LOC118937372
TU10063 lncRNA upstream 92617 9859404 ~ 9915393 (+) True G8225
TU10106 lncRNA downstream 515 10009020 ~ 10009350 (+) True G8264
TU10107 lncRNA downstream 2511 10011016 ~ 10011230 (+) True G8265
TU10108 lncRNA downstream 3345 10011850 ~ 10012067 (+) True G8266
TU10094 lncRNA downstream 42536 10051041 ~ 10053076 (+) True G8253
TU10148 lncRNA downstream 72663 10081168 ~ 10083667 (+) True G8295
XM_036936075.1 mRNA upstream 20315 9980536 ~ 9987695 (+) False LOC110510920
XM_021592072.2 mRNA upstream 25400 9980527 ~ 9982610 (+) False LOC110510920
XM_036935035.1 mRNA upstream 43687 9956678 ~ 9964323 (+) False LOC118937321
XM_036935087.1 mRNA upstream 43687 9956678 ~ 9964323 (+) False LOC118937321
XM_036935135.1 mRNA upstream 43687 9957711 ~ 9964323 (+) False LOC118937321
XM_036938569.1 mRNA downstream 4196 10012701 ~ 10048677 (+) False LOC110533060
XM_036938421.1 mRNA downstream 4201 10012706 ~ 10048677 (+) False LOC110533060
XM_036938604.1 mRNA downstream 18562 10027067 ~ 10048677 (+) False LOC110533060
XM_036938466.1 mRNA downstream 18564 10027069 ~ 10048677 (+) False LOC110533060
XM_036938528.1 mRNA downstream 18915 10027420 ~ 10048677 (+) False LOC110533060
TU9934 other upstream 16468 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 23546 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 548057 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1752132 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1777775 8229297 ~ 8230235 (+) True LOC110501328
TU10501 other downstream 132739 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1468159 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3230108 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 3620358 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 3621531 13630036 ~ 13631890 (+) False G12410

Expression Profile