RNA id: TCONS_00026412


Basic Information

Item Value
RNA id TCONS_00026412
length 3347
RNA type mRNA
GC content 0.44
exon number 13
gene id XLOC_013364
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18803539 ~ 18850302 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTGTTACTCAATCATCCAAACCTTAACAAAGGTCCCAGTGTGTGACCTGGTCCACTACGGAAAAGAGACAGCATTTCCAGCAATGACGTGCATCCAGAACTTACGCTGGTTGTAGTAAATTCCCAAACCTTGCCCGTTTTTCCACAGAGGCCGAGTTAGAGCTACATTTACAAACACAGATCACTGTCTGTACACACTTCGCACCTCAGGCTGCCTGCAGGatcttgtatgtgtgtgtgatgtcagAGGTCATAAAGGCCACGGGTAGGATGTGTGAGTCAGGGTGTGTCTAATGCAGAAAGAAGGACAGTCAACGATAGAGACGGAGGGGCGTGGATGTGTTTTCGTTATAAAAATGGACCCTTAAAATGCAGAGAGAGCACAGCTGCCTTGGACTGGACTGGAAATTTACAGGAAACATCAAGAGCAGGATTGTAAGGCTCATAGACGACTTGTCAAGCTAAATCCATCAATGGCCAGCTATAATGCCATACTGAGTGATGTAGATCTGCAGTGTTACGAGAATAATCATGCTCACCGCACAGAGGAGATGGATGTGGAGCGTCTGCTGGTGCGCAGAGGTCAACCCTTCTCTGTGGTACTGCAGTGTACAGAACAAATCCCACAACTCCCAGACCACCAGATCAACCTCATACTACACCTGGGTAAGAATAATGAGGTGGTCCTGAAGGTATCGGACTCAGAGCAGGATCCTGGGAAATGGTGGTTCAGTCAGCGTAACGCTCAAGGGGAGGTGATGCTGACCCTCCACAGCCCTGCTGATGCTCCTGTGGGTCTCTACAGCATGACTGTGGTTCTGCTCTCTGCGGATGGGGAGATCCAGGAGCAAACCAGTCCTCAGACCTTCTACCTGCTGTTTAATCCCTGGTGCAAAGATGACTGTGTGTACCTTCCAAGCGAGGAGATGCTGCAGgagtacattttaaatgaaaacggTATCTTGTACCAGGGCGCATGGGACGATATAACCACTGTGCCGTGGAACTTTGGACAGtttgaaaaagatGTTGTGGATATTTGCTTCGATGTGCTGGACAATTCACCTGCAGCCCTGAAAAACTCAGAGATGGACATCTTCAACAGAGCAAGCCCTGTTTATGTCAGCAGGACTATTACTGCCATGGTGAATGCCAATGATGACCGCGGGGTGGTATCGGGACGGTGGGATGGAGAGTACAGTGATGGAGTGGCCCCCACAAGGTGGACTGGCAGTGTGCCCATCCTGAGGCGCTGGAGTGAAGATGGAGGACAGAAAGTGCGCTATGGCCAGTGCTGGGTGTTTACAGGAGTGGCCTGCACAGTACTCCGATGTCTTGGCATCCCAACCAGATGTATCACCAATTACTCATCTGCTCACGACACTGATGCAAACATTGCTGTGGATTACCTTGTCAATGATCAGCTTGAAAGTGTGTCTGAAGGCAGGAAGGACACCATTTGGAATTACCACTGTTGGGTTGAATCCTGGATGAAACGTGAGGACCTTCCAGAAGGTTATGATGGATGGCAAGTGCTCGATCCAACTCCTCAAGAAAGGAGTGATGGAATCTTCTGCTGTGGGCCTTGTCCTGTCCGTGCGGTAAAGGAGGGAGAGGTGGGGTTGAAGTATGACACCCCATTTGTGTTTTCTGAGGTGAACGCTGATCTAATTGTCTGGATTGTTCATCCAGATGGGGAACGATCAGAAGTGTCACAAAACAGTAAAATTATAGGCCGGAAGATTAGCACTAAGAGTGTCTACGGAGACTTCAGAGAGGACATTACTGCCAACTACAAATATCCTGAAGGCTCAATGAAGGAGCGAGAGGTTTACAAAAAGGCAGGACGGCAAGTGGGCCAAAAGAAAGATGGCCCAGGCCAGCTCGAGCTTTTCATCAAGCATGCCCCCGCTATCCACGGGACAGACTTTGATGTGATCATAGAGGTGTATAACGCTGGCAGAGAGGACACTGATGCAAAACTCACAGTCACATCGAACGCAATAACCTACAACAGTATCCATCGTGGAGAATGCCAGAGAAAGACAACCTCTCTCACAGTGCCAGCTTACAAAGCTCATAAAGAAGTATTGCGACTTCAGTATGATCATTATGGAGCATGTGTTTCCGAACACCACATGATAAGAGTTACAGCCCTCCTCCAACCCAATGACCAAGACAACCTGATCCTGCAAGAAACCAACATCCCCTTGAAAATGCCAGCGCTTCATGTCAAGATTATTGGCAATGCAATTGTATCCCGTAAACTGACTGCGCACATCTCCTTCACCAACCCCTTACCTATTAATCTTCAAGGGGGTGTGTTTACTGTGGAGGGAGCAGGACTTACAGAGGCcagagaaataaaaacacaTGGCAAGATTGAATCTGGGCAGACTGTGACTGTTAAATTCTCCTTCAAACCCACCCGCGCTGGCCTGAGGAAACTGCTCGTGGACTTTGACTCTGACAGACTTAGAGATGTCAAGGGAGAAGCCTCTGTCATTGTTCGGACAAGAATGCGACATGTAAATGCTGTCCCAGAAATTTAGACAAGCATGCACAGTTCAGAGACGTGTACATCAGAATACTTCACTGTAAATGTAGTTAATGCGATATACTTAATGACAGCTCTTTTGCTTATTACATCATTTGTTGGCTGTTTGTTTATTCTGAGGAGTTCTCTTTAAAATTACTTTATGACGTCACTATGATATTTTACCATGCTTTCTTTCATGCAGACCTTGAATATAAGAACCACAAAATCTGTTTTTGTAAAATGCAGAGTTATGTGAATACACGCTtgcttttattatataaaatgttaatCTGATTAAGAAATTTGTGaagtaattgtttttttactttctgtataatgttgttgtgtttgaattgaaaataaaatacatactttTAATTATGAAAGCCATATTTGTTCACCTTGTTGTTTATCACTgtttataaaaactattttagcatatgtttagGTTTTAGGTTTGGCTAATTATTACAATGTATGCTTGTCTTACTGCATTACATCATGGTCACAAGCCTCTTTAACCACATTGAAGCCTATTGATTTGATATATTAACAAGCAATCGGTTTTCTATGTTGAAGCAACCAAATTTTGGAATGATTTACCTGTTAGCCTAAAATTAAAAGGTAATCTAAAAGTTTTAAGTAGTGTACTTAAAAAGTGGTTATAAAccaaacagcagtgtttgcacaaatagtctatTAGATTGTTTGATACTGCCGCCTTTGCTATTGCCTTACAATttaatgtaaagaattataatgttgtgtatatttatctattttatttttattttatgtcaagCCTCC

Function

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-97 Predicted to enable protein-glutamine gamma-glutamyltransferase activity. Predicted to be involved in peptide cross-linking. Predicted to be active in mitochondrion.

Ensembl:

ensembl_id ENSDART00000131965

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027290 lncRNA downstream 10274 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00027289 lncRNA downstream 54134 18744462 ~ 18749405 (-) False XLOC_013362
TCONS_00027288 lncRNA downstream 76507 18713973 ~ 18727032 (-) False XLOC_013361
TCONS_00026409 lncRNA downstream 76507 18713973 ~ 18727032 (-) True XLOC_013361
TCONS_00027287 lncRNA downstream 168866 18629066 ~ 18634673 (-) True XLOC_013358
TCONS_00026960 lncRNA upstream 26088 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027292 lncRNA upstream 259745 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026439 lncRNA upstream 602312 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00026441 lncRNA upstream 603852 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00027293 lncRNA upstream 1033289 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00026405 mRNA downstream 136123 18636273 ~ 18667416 (-) False XLOC_013359
TCONS_00026404 mRNA downstream 136123 18636273 ~ 18667416 (-) False XLOC_013359
TCONS_00026407 mRNA downstream 140962 18656980 ~ 18662577 (-) False XLOC_013359
TCONS_00026398 mRNA downstream 215794 18547023 ~ 18587745 (-) False XLOC_013354
TCONS_00026399 mRNA downstream 218700 18550418 ~ 18584839 (-) False XLOC_013354
TCONS_00026416 mRNA upstream 20323 18870625 ~ 18875308 (-) False XLOC_013365
TCONS_00026417 mRNA upstream 21101 18871403 ~ 18874921 (-) True XLOC_013365
TCONS_00026418 mRNA upstream 81182 18931484 ~ 18942098 (-) False XLOC_013367
TCONS_00026419 mRNA upstream 84779 18935081 ~ 18937485 (-) True XLOC_013367
TCONS_00026420 mRNA upstream 125237 18975539 ~ 18979520 (-) True XLOC_013368
TCONS_00026411 other downstream 10274 18787384 ~ 18793265 (-) True XLOC_013363
TCONS_00026410 other downstream 54134 18744462 ~ 18749405 (-) True XLOC_013362
TCONS_00026408 other downstream 101775 18696207 ~ 18701764 (-) True XLOC_013360
TCONS_00026403 other downstream 225645 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026402 other downstream 225990 18577474 ~ 18577549 (-) True XLOC_013356
TCONS_00026421 other upstream 144945 18995247 ~ 18999255 (-) False XLOC_013369
TCONS_00026429 other upstream 259745 19110047 ~ 19111751 (-) False XLOC_013371
TCONS_00026433 other upstream 524537 19374839 ~ 19374955 (-) True XLOC_013373
TCONS_00026434 other upstream 572709 19423011 ~ 19423128 (-) True XLOC_013374
TCONS_00026436 other upstream 601280 19451582 ~ 19451651 (-) True XLOC_013376

Expression Profile

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