RNA id: TU11396


Basic Information

Item Value
RNA id TU11396
length 480
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G9446
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10863293 ~ 10869887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttgtgtaaaagtagctagctagcaaagcatttagcgttagcattagcgttagcatccagcacgcaacatttcaacaaaaacataaaagccttcaaataaaatcatttacctttgaagaacttctgatgttttcaatgaggatactctcagttagatagcagatgctcagtttttccaaaaatattatttgtgtattagaaatagctccgttttatacatcacatttggctaccaaaaaaaccccgaaaattcagtcctcaaaacgcgaacttttttccaaattaactccataatatcgactgaaaacatggcaaacgttgtttagaatcaatcatcaaggtgtttttcacatatctcttcgatgatatatagttcgtggaagtgtgctttctctcctgaatcccaggagaaaatgcccgcacctgaagattacgcacaaatttagacaaaggacaccgggcggacctctggaaaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11393 lncRNA upstream 575 10862457 ~ 10862718 (+) True G9444
TU11392 lncRNA upstream 1415 10861610 ~ 10861878 (+) True G9443
TU11391 lncRNA upstream 1712 10861337 ~ 10861581 (+) True G9442
TU11317 lncRNA upstream 64238 10798840 ~ 10799055 (+) True G9368
TU11290 lncRNA upstream 82611 10780125 ~ 10780682 (+) True G9341
TU11410 lncRNA downstream 14 10869901 ~ 10870297 (+) True G9458
TU11416 lncRNA downstream 4542 10874429 ~ 10874896 (+) True G9464
TU11422 lncRNA downstream 10621 10880508 ~ 10880783 (+) True G9470
TU11457 lncRNA downstream 41605 10911492 ~ 10912077 (+) True G9504
TU11462 lncRNA downstream 44845 10914732 ~ 10915135 (+) True G9509
XM_021618308.2 mRNA upstream 700345 10140230 ~ 10162948 (+) False gipc3
XM_021587979.2 mRNA upstream 755405 10104207 ~ 10107888 (+) True lim2.2
XM_036939156.1 mRNA upstream 755422 10104169 ~ 10107871 (+) False lim2.2
XM_021617595.2 mRNA upstream 761656 10096944 ~ 10101637 (+) False asb3
XM_036940763.1 mRNA downstream 563215 11433102 ~ 11492490 (+) False LOC110523899
XM_036940849.1 mRNA downstream 563215 11433102 ~ 11492490 (+) False LOC110523899
XM_036940803.1 mRNA downstream 563216 11433103 ~ 11492489 (+) False LOC110523899
XM_036940911.1 mRNA downstream 563216 11433103 ~ 11492489 (+) False LOC110523899
XM_036940953.1 mRNA downstream 563221 11433108 ~ 11514427 (+) False LOC110523899
TU10501 other upstream 702007 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 871751 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 878829 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 1403340 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 2607415 8255142 ~ 8255878 (+) True LOC110505168
TU11995 other downstream 606777 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 2368726 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 2758976 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 2760149 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 3322569 14192456 ~ 14208014 (+) True LOC110486057

Expression Profile