RNA id: TCONS_00026960


Basic Information

Item Value
RNA id TCONS_00026960
length 955
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id XLOC_013366
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18876390 ~ 18878724 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caaacacacaatacagTGTCCTCCTAACACAATAGAGTCTACTATAGACTGTACAATatggtaaattaaattaatagacACCATCaatatgcattaataaaaagcaagtaagttttaaagggatagtttacccagaaCAGAATAATTTGTCACAATTTACTCaccggtaggtagtgctgtcgcctcactgcaagaaggttgctggttcgagcctcggctgggtcagtttgcgtttctgggtggagtttgcatgttttccctgcgtttgcgtgggttttccccccacagaccaaaaacatgcggtacaagtgaattgggtcggctaaattgtccatagtgaatgcgtgtgaatgagtgtatcccaacaaacacacaacgttgcctcaacgtagcgaccttcctacaacgttgtaTCAACATtgcaaaaaggttgaggattctacgttgttgctaaaggttgtcacaacgatgtcataaggttgccatttaaacatcatGAGGGTCGCATGCTTTAGGTTGTGCTTAGGTTGCGTGGACgaccactgtacaacatttactggtcacagctgaatcagtttaaatttcaacaagccgtcgtctcattcatcaacgaccgaggagacgctattttcacatggaggtaatcttctattgataatttctggattttaagtatgtaatgTTTTCAGCTGTTGAATTCACCTCAGATCAGTGTTGCTGTAATTCCCGATCTATGGAAAGAATAATTGAATGAGcgagcaacgccacaactacaggacctcttctttctcttctcataatttaactgcgctccccggtctgctgtattctccagtccagagcttcactgcccagtgtctgaattttaatttataaatttatttatatatatatatatatatatatatatatatttacattttaatgatttcttgtttacttttcttgtttgttt

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0071900 regulation of protein serine/threonine kinase activity biological_process
GO:0043405 regulation of MAP kinase activity biological_process
GO:0043408 regulation of MAPK cascade biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027291 lncRNA downstream 55020 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00027290 lncRNA downstream 83125 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00027289 lncRNA downstream 126985 18744462 ~ 18749405 (-) False XLOC_013362
TCONS_00027288 lncRNA downstream 149358 18713973 ~ 18727032 (-) False XLOC_013361
TCONS_00026409 lncRNA downstream 149358 18713973 ~ 18727032 (-) True XLOC_013361
TCONS_00027292 lncRNA upstream 231323 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026439 lncRNA upstream 573890 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00026441 lncRNA upstream 575430 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00027293 lncRNA upstream 1004867 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00027294 lncRNA upstream 1261348 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00026416 mRNA downstream 1082 18870625 ~ 18875308 (-) False XLOC_013365
TCONS_00026417 mRNA downstream 1469 18871403 ~ 18874921 (-) True XLOC_013365
TCONS_00026413 mRNA downstream 26088 18803539 ~ 18850302 (-) False XLOC_013364
TCONS_00026412 mRNA downstream 26088 18803539 ~ 18850302 (-) False XLOC_013364
TCONS_00026415 mRNA downstream 26474 18832226 ~ 18849916 (-) True XLOC_013364
TCONS_00026418 mRNA upstream 52760 18931484 ~ 18942098 (-) False XLOC_013367
TCONS_00026419 mRNA upstream 56357 18935081 ~ 18937485 (-) True XLOC_013367
TCONS_00026420 mRNA upstream 96815 18975539 ~ 18979520 (-) True XLOC_013368
TCONS_00026422 mRNA upstream 116523 18995247 ~ 19004247 (-) False XLOC_013369
TCONS_00026423 mRNA upstream 116523 18995247 ~ 19005919 (-) False XLOC_013369
TCONS_00026414 other downstream 55020 18815654 ~ 18821370 (-) True XLOC_013359
TCONS_00026411 other downstream 83125 18787384 ~ 18793265 (-) True XLOC_013363
TCONS_00026410 other downstream 126985 18744462 ~ 18749405 (-) True XLOC_013362
TCONS_00026408 other downstream 174626 18696207 ~ 18701764 (-) True XLOC_013360
TCONS_00026403 other downstream 298496 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026421 other upstream 116523 18995247 ~ 18999255 (-) False XLOC_013369
TCONS_00026429 other upstream 231323 19110047 ~ 19111751 (-) False XLOC_013371
TCONS_00026433 other upstream 496115 19374839 ~ 19374955 (-) True XLOC_013373
TCONS_00026434 other upstream 544287 19423011 ~ 19423128 (-) True XLOC_013374
TCONS_00026436 other upstream 572858 19451582 ~ 19451651 (-) True XLOC_013376

Expression Profile

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