RNA id: TU11550


Basic Information

Item Value
RNA id TU11550
length 317
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G9591
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11004787 ~ 11005103 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atattttccaacggggctatacatttgggtgagtttttttttctcgcctgagtagtcctgtttcactgccaaaaataaaattaaaccatctagtgttcagtgaaataacaacacaatgtcaaatacaggtagcctcgtcaaataattaacatccaatcacattaattAACTGTTACTCTCTTGCGGGAAATCCACTAATGGTCCGTaggtagccaaacgtagctgctgctcatgttggtatctgtactgatggtgcaaaagccatgacagggagacatagtggagtgggaacgtgtgtgcaagcagttgctcccgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11464 lncRNA upstream 88507 10916056 ~ 10916280 (+) True G9511
TU11462 lncRNA upstream 89652 10914732 ~ 10915135 (+) True G9509
TU11457 lncRNA upstream 92710 10911492 ~ 10912077 (+) True G9504
TU11422 lncRNA upstream 124004 10880508 ~ 10880783 (+) True G9470
TU11416 lncRNA upstream 129891 10874429 ~ 10874896 (+) True G9464
TU11552 lncRNA downstream 688 11005791 ~ 11006030 (+) True G9593
TU11709 lncRNA downstream 109939 11115042 ~ 11115249 (+) True G9745
TU11748 lncRNA downstream 133843 11138946 ~ 11139162 (+) True G9784
TU11750 lncRNA downstream 135388 11140491 ~ 11140699 (+) True G9786
TU11779 lncRNA downstream 174730 11179833 ~ 11181271 (+) True G9814
XM_021618308.2 mRNA upstream 841839 10140230 ~ 10162948 (+) False gipc3
XM_021587979.2 mRNA upstream 896899 10104207 ~ 10107888 (+) True lim2.2
XM_036939156.1 mRNA upstream 896916 10104169 ~ 10107871 (+) False lim2.2
XM_021617595.2 mRNA upstream 903150 10096944 ~ 10101637 (+) False asb3
XM_036940763.1 mRNA downstream 427999 11433102 ~ 11492490 (+) False LOC110523899
XM_036940849.1 mRNA downstream 427999 11433102 ~ 11492490 (+) False LOC110523899
XM_036940803.1 mRNA downstream 428000 11433103 ~ 11492489 (+) False LOC110523899
XM_036940911.1 mRNA downstream 428000 11433103 ~ 11492489 (+) False LOC110523899
XM_036940953.1 mRNA downstream 428005 11433108 ~ 11514427 (+) False LOC110523899
TU10501 other upstream 843501 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1013245 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1020323 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 1544834 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 2748909 8255142 ~ 8255878 (+) True LOC110505168
TU11995 other downstream 471561 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 2233510 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 2623760 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 2624933 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 3187353 14192456 ~ 14208014 (+) True LOC110486057

Expression Profile