RNA id: TU11884


Basic Information

Item Value
RNA id TU11884
length 316
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G9909
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11252942 ~ 11253257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtactggtacctcgtgtatatagccatgttattacctcgtcctcctgcacattgactcagtactggtaccttgtgtatatagccatgttattacctcgtcctcctgcacattgactcagttctggtaccttgtgtatatagccatgttattacctcgtcctcctgcacattgactcagtactggtacctcgtgtatatagccatgttattacctcgtcctcctgcacattgactcagttctggtaccttgtgtatatagccatgttattaccttgtcctcctgcacattgactcagttctggtaccttgtgtatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11880 lncRNA upstream 13402 11239305 ~ 11239540 (+) True G9905
TU11878 lncRNA upstream 17555 11234978 ~ 11235387 (+) True G9903
TU11838 lncRNA upstream 50181 11202559 ~ 11202761 (+) True G9869
TU11814 lncRNA upstream 66867 11185806 ~ 11186075 (+) True G9845
TU11779 lncRNA upstream 71671 11179833 ~ 11181271 (+) True G9814
TU11888 lncRNA downstream 6492 11259749 ~ 11260055 (+) True G9913
TU11895 lncRNA downstream 22264 11275521 ~ 11275822 (+) True G9920
TU11904 lncRNA downstream 37231 11290488 ~ 11290688 (+) True G9929
TU11909 lncRNA downstream 45487 11298744 ~ 11298971 (+) True G9934
TU11910 lncRNA downstream 47161 11300418 ~ 11301310 (+) True G9935
XM_021618308.2 mRNA upstream 1089994 10140230 ~ 10162948 (+) False gipc3
XM_021587979.2 mRNA upstream 1145054 10104207 ~ 10107888 (+) True lim2.2
XM_036939156.1 mRNA upstream 1145071 10104169 ~ 10107871 (+) False lim2.2
XM_021617595.2 mRNA upstream 1151305 10096944 ~ 10101637 (+) False asb3
XM_036940763.1 mRNA downstream 179845 11433102 ~ 11492490 (+) False LOC110523899
XM_036940849.1 mRNA downstream 179845 11433102 ~ 11492490 (+) False LOC110523899
XM_036940803.1 mRNA downstream 179846 11433103 ~ 11492489 (+) False LOC110523899
XM_036940911.1 mRNA downstream 179846 11433103 ~ 11492489 (+) False LOC110523899
XM_036940953.1 mRNA downstream 179851 11433108 ~ 11514427 (+) False LOC110523899
TU10501 other upstream 1091656 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1261400 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1268478 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 1792989 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 2997064 8255142 ~ 8255878 (+) True LOC110505168
TU11995 other downstream 223407 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 1985356 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 2375606 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 2376779 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2939199 14192456 ~ 14208014 (+) True LOC110486057

Expression Profile