RNA id: TU12290


Basic Information

Item Value
RNA id TU12290
length 515
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G10285
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11580543 ~ 11581057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGTGTgcagttttagtcagaattagggtaaaacaatatatCTGAACAATATGTCTCTATAGTATCTCAAACACAGCAAGAGCAAGATTCGGTGCCGACCTTTGCTAGGAGCCACTGAGATAtttgggagaggacagggagtgcTTCTCACGGTCCCTAATCTTTGTCGACTGGGTATTGAtacagtatgtgcgtaggatacctactgtttgtgtgtatgtatgtgtgtatgatatctactgtttgtgtggaagtatgtgtgtatgatatctactgtttgtgtggaagtatgtgtgtatgatatctactgtttgtgtggaagtatgtgtgtatgatatctactgtttgtgtggaagtatgtgtgtatgatatctactgtttgtgtggaagtatgtgtgtatgatatctactgtttgtgtggaagtatgtgtgtatgatatctactgtttgtgtggaagtgtgtgtgtatgatatctactgtttgtgtggaagtatgtgcggcgctataaaatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12278 lncRNA downstream 11420 11568909 ~ 11569123 (-) True G10273
TU12263 lncRNA downstream 23613 11556299 ~ 11556930 (-) True G10258
TU12238 lncRNA downstream 39234 11541067 ~ 11541309 (-) True G10235
TU12236 lncRNA downstream 40411 11539924 ~ 11540132 (-) True G10233
TU12231 lncRNA downstream 42427 11537897 ~ 11538116 (-) True G10228
TU12323 lncRNA upstream 45156 11626213 ~ 11626426 (-) True G10318
TU12328 lncRNA upstream 47658 11628715 ~ 11629019 (-) True G10323
TU12334 lncRNA upstream 50798 11631855 ~ 11632111 (-) True G10329
TU12341 lncRNA upstream 55003 11636060 ~ 11636274 (-) True G10333
TU12366 lncRNA upstream 79722 11660779 ~ 11660979 (-) True G10358
XM_021618655.2 mRNA downstream 154577 11412825 ~ 11425966 (-) True LOC110533997
XM_036940651.1 mRNA downstream 168708 11313871 ~ 11411835 (-) False LOC110533913
XR_005053633.1 mRNA downstream 603381 10977107 ~ 10977162 (-) True LOC118966751
XM_036939683.1 mRNA downstream 957964 10220327 ~ 10622579 (-) False LOC110522842
XM_036939708.1 mRNA downstream 1037073 10220327 ~ 10543470 (-) False LOC110522842
XM_036989305.1 mRNA upstream 218358 11799415 ~ 11802397 (-) True LOC110524396
XM_021618896.2 mRNA upstream 229651 11810708 ~ 11819081 (-) False LOC110534151
XM_021619007.2 mRNA upstream 251632 11832689 ~ 11834717 (-) True uts2d
XM_036941676.1 mRNA upstream 465044 12046101 ~ 12052746 (-) False LOC110534884
XM_021619862.2 mRNA upstream 492022 12073079 ~ 12089590 (-) False tab3
TU12268 other downstream 17418 11562737 ~ 11563125 (-) True G10263
TU10337 other downstream 1989957 9567941 ~ 9590586 (-) True G8455
TU9756 other downstream 2397509 9181455 ~ 9183034 (-) False G7965
TU9757 other downstream 2397509 9181455 ~ 9183034 (-) False G7965
TU9788 other downstream 2426596 9153270 ~ 9153947 (-) True G7985
TU12351 other upstream 64023 11645080 ~ 11645703 (-) True G10343
TU12850 other upstream 274653 11855710 ~ 11856390 (-) True G10776
TU12868 other upstream 292048 11873105 ~ 11873891 (-) True G10792
TU13053 other upstream 605847 12186904 ~ 12205391 (-) False LOC118938491
TU13056 other upstream 605847 12186904 ~ 12205391 (-) False LOC118938491

Expression Profile