RNA id: TCONS_00026428


Basic Information

Item Value
RNA id TCONS_00026428
length 5692
RNA type mRNA
GC content 0.51
exon number 30
gene id XLOC_013370
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19044839 ~ 19103929 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttCCACATAAAAACACATATTAAAGCACAGTAAATGAAATTCACTCAACTGTAGCTCTCACATAAGTCCAATCATTCCTATTCGTGTTGTTTATTACAGTCTGTATCATTAAATCCAACATTTTCAAACACAAGTCTGTCAATAACATTCAGATGGCCAGTCTTTATATGGACTACCTGTGGACGCCTCCACATTAAAATCAGCGACAGTCCCCGGAATGTTCAAATGACGTCACGGCTTGCTGGAAGTCACGTGGCCCGCTGGCAGGTTTTGATAAGCGTTTGCGAGACGGCCGAGCTGAGCGCATCTCTGAAAGCGTACAGAGAAGAAGATGAGGCACTGCCCTCCCTGAGGGATGTTTATACGTGATGAAGGAATAATAATTCATTTGTCTGATGAAAATGGATGGAAATACATAAAGACATTCTTCCGTCCAGTGATTAACGATCAAAATAACGGTGCGCGTGTCAATGAGCGTGTCCTCAGAATCGTCGTCCTACTGAAAACAcaCATACAGTCCTCGTTCTATGGGGATGATCGAAGATGGAGGAAAAAAGCCTTCGTGTAGCAGACTACTTTGTGGTGGCAGGACTCACCGTCTCTTCAAAGCCCCTGGAGGAAGATGTTCACCCTGAAGATGGAGCTCACCGAAGCTCAGCTCAACTCAAGGCACCGATCACTGATGTGGCAGTGGTGATTCGCTCTCTAGGGGAGGAAGTACCTAGAGGGTATACCTGTGTTGAATGCACCCCCTCCGGACTCCCTGCTGAACTGAATGGAGGAAGCCTCATGGGGCCGCAGATCTTCCTGTGCTATAGGAGAGGCAGAGATAAACCACCGCTCACCGATCTGGGCATCCTCTATGAGTGGAAGGAGAAACTGAAGCCAGACTGTCAGATTATTCAGACTACACCCTCCGGACGCCCTGCTAACATCAGTGGCTCCTCCTCTCAGAGGATCTACATCACATATCGACGCGCCGCGGAGAATCACTCTCACGCCACGCTGGCTGTCACAGACATCTGTGTCATTATTCCCGGCAAGGGAGAGACTCCACCACATGCCTTTTGCAAGGTGGACAAAAACCTTAACAGCAGTATGtgggggTCTTCTGTGTACTTGTGCTACAAAAAATCTCTGGCCAAAACCAACACACTTGCATTCAAAGCAGGTCTTTTGTCCAGATACCCAGAGGAGGACTACGATTCCTTTCCTTTGCCTGAATCCGTGCCCTTGTTTTGCCTGCCGATGGGAGCGTCCATCGAGTGCTGGTCCTCTCACACCAAATATTCTCTTCCGGTCTTTTCAACATTCGTTCTCACAGGCGCCTCTGGAGAAAAGGTTTATGGTGCTGCCATACAGTTTTATGAGCCCTACCCAGAAGAGCATTTGACTGAAAAGCAGAGATCTCAGCTGGGACTTCAGGCTAACGGAATCAGGCCTGACGGATCCATGACTGTCCACACCAACAAAAGCATCTGCCTTCTCTCTCACTGGCCCTTTTTCGATGCTTTTCGTAACTTTTTGACCTTCCTCTATAGATACTCCATCTCAGGTCCACACACTCTACCCATTGAAAAGCATATTTCTCATTTCATGCACAAGGTTCCCTTTCCCTCCTCTCAAAGGCCACGTATCCTGGTGCAGCTGTCTCCACATGATAGCCTGATGCTGAGCCAGCCCGTTTCCTCTCCTCTCCCTCTGAGTGGAGGAAGACTCTCTACATTGCTATTGAATCTTGGCCCTAAGAATGCAGCAACTCTATTGGTTTTAGCTGTGACCGAACACAAGATCCTGGTGCACTCCTTACGTCCAGCTGTTCTAACCAGTGTCACCGAGGCCCTGGTATCGATGATTTTCCCCTTCCACTGGCCGTGCCCATACATTCCTCTCTGCCCGCTGGCCCTGGCAGATGTGCTCAGTGCTCCATGCCCTTTCATTGTTGGTGTGGACTCGCGGTACTTTGACCTCTATGAGCCACCGACGGACATAAGCTGTGTGGACCTGGACACAAACACTATAACTCACAAAGAAGAGCGCAGATCCCTGACCTGGAAGATCCTGCCAAGAAAAGCCTGTAAACATCTGATCAACACCCTCAGCAATCTCCACCAGCAACTGGATGAGGGTTATCAGATGAGTCGTGAGGAAGGACAGATGGAGGCCTTTATGAGCGAACGGGAACCTGGCAGTGGTGGGAAAAGTCTGGAAACGTTGGAGCTGGAGATTCAGGAGGCTTTTCTGCGCTTTATGGCGGCCATCTTGAAAGGCTACCGCTCATACCTGTTGCCCATCACACAGGCTCCTTCTGAGAAAGCCACAGACGCCAGCTCACTCTTTGATCTGCAAGGCTTTTTGAAGAGTCGTGATCGATCCCATCAGAAGTTTTACTCCCTCATGACTAAGACTCAGATGTTCATTCGTTTCATTGAAGAGTGCTCTTTTGTCAGCGATAAGGATGCAAGCCTTGCTTTCTTTGATGACTGCGTTGACAAGGTGGACAGCGATAAGCCAGAGGACACTAGGCTTATTGAACTTGACAAATCCCACCGGAGCGAACACACGGTCTTCATCagccctccagagctgccagcaCTTCCAGAAGGAGAGGAGCCACCTATGGTTTACAGTTACAGCGGCTTCCCGGCACTGAACGCTCAACTCTGTGAGCATCAGGATGGTCTCAGAGTCCCCAAAGCAACATCAGCCCTGAGACACATCAGTCCCATCAGCCCTGCTGCTATATTCCGTCGCTCCCAACAGGAGATCAAATCAGCCCAGCGGATGGCCAAAACCTACTCCTCCATCCCTCAGATGTGGTCTAAATGTCTCCTCAGGCACTGTCACGGTCTGTGGTTCATCTGTTTGCCTGCGTACGTCAGCGCGTGTCACTCTAAAGTGCGCGCTCTGCATACTGCTTACGATGTGCTAAGAAACATGCAGGACAAAAAGCTGCAGCCTCCAGATGAGGTGTGTTATCGAGTGCTGATGCAGCTGTGTGGGCAATACGGTCAACCTGTTCTAGCGGTTCGAGTCCTGTTTGAGATGAAGAAAGCCGGAGTTCAGCCTAACGCCATTACATATGGATACTACAACAGAGCCGTCCTGGAGAGCACATGGCCTTCTTCCACCAGAGGGGGATACTTCCTGTGGGGAAAGCTGAGAAATGTGGTCCGGGGTGTGGTGCTGTTCAAACAAGTATGGAGGAGGCAGACCACCCACCCGAAAGACACTCATCTTTCTGATGCCAGTGATCTCGACAGTGTCAGTCATGGCAGCCTGGACAGCTCTAACGATTCAGCGGAGCGAGTTTCCATTGATACAGACTTCACCAAAATGGATTCCAGTGATGACAGATCCAGCACAGGGGGTCAGTCTGATCAGGGCTACGACTCTCTGTCTAAAGAGGAGGTGAGGTTTGGTGGAGGTGAAGAGCAGAACTCCTCTCCAGACATCAAGGAGAAGAAGGACAGAGACTCTTGTCCATCATCTCAGTCGGAACTCTCAAAGAAAGAGGATTCATCCCTTGCAGCTGGAATCCATCCTCCGGAAATCAACAAGGAATCCAGTCAAGCCTTTTCCAACACCATTCCGAAGACAAAAAGACCTAACTCCCTGGATATTTTTGGAGAGAAACCTGTAAGACCCAATACACTGGATCTAACCCCAGATAAGCCAGTAGACTCTGTACCTGTAGCACAGACACAAACAGAAGCATTGGAGGGCGTTGTGAGCCCACCTAAAGTTTCCGTAGAGAGGAAAGCCAGCTGCACGGTTACCATGGAAAAGACAGTTGCCATGGAGAGCGGGCACACTGGCGTGGAGAGGAGCATGAGCTGCAATAGTGCTCTCAGTCGAGTGGTGAAGAGGACGGGCATTGAAGCAGGGTTTGATCCTCTGTCCCTCATGGCAGCTGAGACTCACGGCCATGAGGACGAGGATAATGCGGGCACCCCAAGCGCCCGTCGGGACCTGGCTGAGGAGATTCATCATTACATGAACAACCTGAGCAGCCCGTTAAGCCAGCGTTCTCTCAGTGTGGACCTGAAGGGCCACCAGACCCCGTCCCCTCACAGCTCGCCCTGTATGTCCAAAATAGCGCTGGGCTCCCCCAGTGCCTCTCAGCTCCAGCCTCAGCCACGAACACGACTGTTCTCCTCGCCCTCGCTTCCTCAGGGCCGCGTGCGCAGGGTCAGAGAGCAGCGGCCCACTTCTCTGGCCTCACCTTCATCACCCACCCCCTCCTCTTCATCTTTCTCTATGGACTCTCTGCTCACTCCGACCCTGGATGTGTTCAAGAGCAGCTTCCTGTCTGCTGGGAAGGGCGTCGCTGAGAAAGCCAGTAGATTGTATTCCAGACTTTCCTCGCAGACGTCCATTGCACAAGATTTAAACTCTGACCGGGTCAGTGTGTCCTCGCTTGGGTCTGGTGACCCTGACTGCTCCTCTTTGATTGAGAGTGATCTGTGTGTCGATCCTGAAGGGCTCTCCTCCCCACAAAGGGATGCAGCTCAACCCGTCATACGGCCCAGAAAGAGCCCTCACAGGAGTAATAACTGCCTAGAAAGCCCATCCGCGGCACCTCGACTCTTCCGACAGGCCTCCCTCACTGGTCCATCGCTGACAGTAATGAAAGCTCTGCAGACTCCAGACACATGCTCTGATTCCAGTTTCAGTCAGTTCACACAGAGTTATGCTGTCGAAGTTCGTATGTCGAGTTGTTCTCGCTGCAACACCTGTGAGAGTTTGGTGTATGATGAAGAGATCATGGCTGGCTGGACAGCCGACGACTCAAACCTCAACAGCACATGTCCTTTCTGCGGCTCTCCGTTTCTGCCTCTGCTCAATGTGGACATCACAAACATGGGTGAACAAGAAAGATCACCTTGTCAAGATACAAGTTCTGGCCAGACAGAACGAGAAGATGAGCCACCAAAAGTGTATGATGCCTCTAGCACTCTGTCCAACAAGGACAAAAAAGACCCTGAGACAGTGACCGTGCCATACCTGAGTCCTCTGGTTCTCTGGAAAGAGCTGGAGAGTCTGCTGGAAAATGAAGGGGATCAGGCCATCTCCTCTGCAGCCATTGTGGATCATCACCCCATCGTCTTCTGGAACCTAGTGTGGTTTTTCCGTCGCCTGGATCTTCCCAGCAGCCTCCCGGGTCTCTATCTGACCTCCAAAAACTACTGCAGAGATACTCCAcaGTCTCAGCAAAGTTGTGCTTCAGAAGACAGTAAGAACGTGTTGGTCCAGATCCTGTGGGACAATTGCAGACTGCACCAGGATCACATTCAGCCTTGCTACCTGCTCTGGAAATCATATTgTTTAAGCACTGCAGTGTCTTCTAGTCTTAATGAGGATGAGCAGGCTGTAAGTCTGGAGCTGCTACAGACGCTGGTGAAGAACATCCAAAAGAACGATGTCTATCAGCCCATGAGTCTCATACTGCAGCTGCTGGGCTCCAGGCTGGGCTTCAGCAGGCAGCGGAGTTTGTATAGAGACATCCTGTTTCTATCTTTAGTGGCTTTGGGAAAGAGTAGCATAAATATCGatgcaTTCGACCGTGAATACAAAACAGCGTACGACCGTTTGACACCCAGTCAGGTCAAGATGACGCACAATTGTGACCGTCCACCCAGTGCTGGAGTCATGGAGTGCAGACGAACCTTCGGCCTTCCCAGTCTGTGA

Function

GO:

id name namespace
GO:0032483 regulation of Rab protein signal transduction biological_process
GO:0031410 cytoplasmic vesicle cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-285 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of Rab protein signal transduction. Predicted to be active in cytoplasmic vesicle. Orthologous to human DENND4A (DENN domain containing 4A).

Ensembl:

ensembl_id ENSDART00000188370

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026960 lncRNA downstream 166402 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027291 lncRNA downstream 223756 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00027290 lncRNA downstream 251861 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00027289 lncRNA downstream 295721 18744462 ~ 18749405 (-) False XLOC_013362
TCONS_00026409 lncRNA downstream 318094 18713973 ~ 18727032 (-) True XLOC_013361
TCONS_00027292 lncRNA upstream 6118 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026439 lncRNA upstream 348685 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00026441 lncRNA upstream 350225 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00027293 lncRNA upstream 779662 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00027294 lncRNA upstream 1036143 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00026424 mRNA downstream 38492 18995594 ~ 19006634 (-) True XLOC_013369
TCONS_00026423 mRNA downstream 39207 18995247 ~ 19005919 (-) False XLOC_013369
TCONS_00026422 mRNA downstream 40879 18995247 ~ 19004247 (-) False XLOC_013369
TCONS_00026420 mRNA downstream 65606 18975539 ~ 18979520 (-) True XLOC_013368
TCONS_00026419 mRNA downstream 107641 18935081 ~ 18937485 (-) True XLOC_013367
TCONS_00026430 mRNA upstream 39508 19143437 ~ 19350792 (-) False XLOC_013372
TCONS_00026432 mRNA upstream 39508 19143437 ~ 19405616 (-) False XLOC_013372
TCONS_00026431 mRNA upstream 39508 19143437 ~ 19405616 (-) True XLOC_013372
TCONS_00026435 mRNA upstream 347141 19451070 ~ 19456269 (-) False XLOC_013375
TCONS_00026446 mRNA upstream 359496 19463425 ~ 19484919 (-) False XLOC_013382
TCONS_00026421 other downstream 45871 18995247 ~ 18999255 (-) False XLOC_013369
TCONS_00026414 other downstream 223756 18815654 ~ 18821370 (-) True XLOC_013359
TCONS_00026411 other downstream 251861 18787384 ~ 18793265 (-) True XLOC_013363
TCONS_00026410 other downstream 295721 18744462 ~ 18749405 (-) True XLOC_013362
TCONS_00026408 other downstream 343362 18696207 ~ 18701764 (-) True XLOC_013360
TCONS_00026429 other upstream 6118 19110047 ~ 19111751 (-) False XLOC_013371
TCONS_00026433 other upstream 270910 19374839 ~ 19374955 (-) True XLOC_013373
TCONS_00026434 other upstream 319082 19423011 ~ 19423128 (-) True XLOC_013374
TCONS_00026436 other upstream 347653 19451582 ~ 19451651 (-) True XLOC_013376
TCONS_00026437 other upstream 347941 19451870 ~ 19451937 (-) True XLOC_013377

Expression Profile

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