RNA id: TCONS_00026431


Basic Information

Item Value
RNA id TCONS_00026431
length 3744
RNA type mRNA
GC content 0.56
exon number 26
gene id XLOC_013372
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19143437 ~ 19405616 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGAGAGGCAGAAACATTCGGCAACAGAGTCGGTCGGTTTCAGAGGATGAACAGCTGCGCTGCGCTCTGACACCACTGCCTTCAAAACACGAGCAGCACGGCGAATTTGAGAAAACACAGTCCCGGACTCTTCTTCATGTAGTCTCCACCTTCATTACCAACGAGAAAGTGGACAGTTTAATTCCAAAGATGAAGATTATGGACGAACATTAAGCTGCTATTTCGGATCAAGGAAAGTAAAACACACCGAGACAAgGTGCCCTCTCTTTGCTCTGAGTCTTGATTATCGGTCTGTCTGGTCCGCAGCTCTTCTGTGTCTGGTTGTTTGGTTCAGGCGGGCAGTGATCTTCCACCGCAGACGTCTCCTGGGACTGCAGCCCGTGGTCTGAGGAGGAGTCATGGGGCCGGTACGGGCCTACCCATTAGCCCTGCCTGTGCTGGCTGTTCTGGGCCTCATTATCAGCGCATGGAGCCTCAACCCTGATGACCCCAATGTCTGCAGTCACTGGGAGAGCTATGCAGTGACTGTTCAGGAGTCTTACGCTCATCCTTTTGACCAGATCTACTATACCAGATGCACCGACATCCTCAACTGGTTCAAATGCACCAGACACAGGACCAGCTACAAGACCGCATATCGGCGCGGGGTGAGGACAATGTACCGTCGACGTTCACAGTGCTGTCCTGGCTACTTCGAGAGCGGGGACTTGTGTGTCCCTCGATGTAGCGAGGAGTGTGCCCATGGTCGTTGTGTGTCTCCTGATACGTGTCAGTGTGAGCCAGGCTGGGGAGGACTGGACTGCTCTAGTGGTTGTGAAAGTGGCTACTGGGGCCCCCATTGCAGCAACCGTTGTCAGTGCAAGAATGGGGCCCTGTGTAACCCCATCACAGGGGCCTGTGTCTGCACAGACGGCTACCAAGGCTGGCGCTGTGAGGATCTGTGTGAGCCCGGCTACTATGGCAAGGGCTGCCAGCTGCAGTGTCAATGCCTCAACGGTGCCACCTGCCACCACGAGACGGGGGAATGCATATGCGCACCAGGCTACATGGGCCCCATCTGTGGAGAGCGCTGTCCCTCTGGAAGTCACGGGCCACAGTGTGAGCAGCGATGCCCCTGTCAGAACGGAGGAACCTGCCATCACATCACTGGGGAGTGTTCCTGCCCGGCTGGATGGACGGGTTCTGTGTGTGCCCAGCCATGTCCGTTTGGAAAATATGGGATCAACTGCAGCAAGGAATGCTCATGCCGCAATGGAGGACTCTGTGACCACATCACAGGACAGTGTCAGTGCATGGCGGGATACAGCGGCCACAGGTGCCAGGAAGAGTGTCCGGTTGGCACCTATGGACCCCAGTGCACCCTCCATTGTGACTGTCAGAATGGGGCAAAGTGTTACCACATCAATGGAGCTTGTTTGTGCGATACGGGATTCAAAGGGCACCACTGCCAGGATAGATTCTGTCCACCAGGCCTTTACGGTCTCATCTGTGACAAATACTGCCCCTGTAATTCCACCAACACAATCAGcTGTCACCCCTTGACTGGTGAATGCTCATGTACGGCGGGATGGACGGGCCTATATTGTAACGAGACCTGTCCCCCGGGCTACTATGGAGAAGGATGTGGAGTGCCGTGCCAGTGTGCTAATGGAGCCGACTGCCACAGTCTCACCGGGGCCTGTATCTGTGCCCCGGGCTACACAGGAGATGACTGTTCCCAAACCTGCCCATCTGGACTATTTGGGACTAACTGCACTTCCATTTGCCACTGCCACAACCAGGCGTCCTGCTCACCAATCGATGGCTCCTGTATCTGTAAAGAAGGTTGGCAGGGTGTGGACTGTTCAATCCTGTGCTCCAGCGGGACCTGGGGTTTGGGCTGTAACCAGACTTGTTTGTGTGCCAATGGTGCGGCTTGTGACCCAATCGATGGCTCTTGTACCTGTTCCTCAGGATGGAGAGGGGAGCGCTGCCAGCAGCCGTGCCCCGATGGCACATATGAGTTGGAGTGTCGCGAGCGTTGTGACTGTAACCACGCTGATGGATGTGACCATGTGAGTGGATTATGTCGCTGTCTGCCAGGATGGACAGGCATCCACTGTGACAGCATCTGCCCGCAAGGCTTCTGGGGGTCCAACTGCTCCATGACCTGCTCATGCCAGAACGGAGGTTCCTGCTCTCCTGAAGATGGGACCTGTGTTTGCGCTCCTGGCTACCGAGGGACGTCCTGCAAGAGAATTTGTCCTCCAGGTTTCTATGGGCACCGCTGCAGTCAGTTATGCCCACAATGTGTGCACAGCACTGGGCCTTGTCACCACGTCACGGGTCACTGTGAGTGCCTGGCCGGCTTCTTCGGCTCGCTCTGCAACCAAGTGTGTCCCAGTGGAAAATTTGGGAAAGCCTGCGCTGAGATCTGTCTGTGCACTAACAATGGAACCTGCAATCCTATTGATGGCTCTTGCCAATGCTTCCCAGGCTGGACCGGAGACGACTGCTCACAGATTTGTCCCATAGGCCAGTGGGGCCCCGACTGCTTGAACTCATGTAACTGTCACAACGGAGCCCAATGTAGTGCCTACGACGGAGAGTGCAGGTGCAGCCTGGGCTGGACTGGCCTCTACTGCACACAGCGCTGTCCCTCAGGGTTTTATGGGCGAGACTGTGCAGAGGTGTGCCGCTGTCAAAATGGAGCTGACTGTGATCATATCACTGGCCAGTGTGCCTGTCGGACTGGCTTTATTGGGACCAACTGTGAACAGAAGTGTCCTCCCGGGACATTTGGCTATGGCTGTCAGCAGCTGTGTGAATGTATGAACAACGCCACCTGCGACTATGTGACTGGAACCTGCTACTGCAGCCCGGGATACAAAGGCATCCGCTGTGACCAGGCGGCTCTAGTGATGGAGGAACTCAACCCGTACACTAAGATCAGCCCCGCTCTGGGTTCAGAACGCCAGTCCGCAGGCGCCGTCATGGGCATCATCTTCCTGCTCCTGATCATCATGGCCATGCTCAGCTTGTTTGTTTGGTTCAggcagagacagagagacaaaggACAGGAAATGCCCAGTGTTTCGTACACCCCAGCTCTGCGTGTCACCAACACTGACTACTCTCTTTCTGAAACGTCTCAGAGCAGCAGCAGTGGCCAGTGCTTCTCCAATCCCAGCTACCACACTGTGGCACAGTGCAACATCTCATCCTCCATAACTAACAACCTGGACGGCACTCTCACTCTGAAGAAAGGCGACAGGAACAGCTCAGAATGGAGAGCATACTGCAATCTCAATGACCTGGGAGTATCAAGAGGAGACACGCTTACACTGAGGGACAACAAAACCACCCGAATGGCCAAAGATTACATAAAGGCCTCGATGTGTAGCTCCAGCTCGTGTTCCCTCAATAGTGAGAACCCGTACGCCACCATCCGAGATCCTCCCAGCCTGGCCTGCAAGCACACGGAGAGCAGTTATGTGGAGATGAAGTCTCCCGCTCACAGAGACCTGACCTTCTGCTCCAGCACCAGCACAACCCTCACCACTGCCAGCAGGAACGTCTATGATGTTGAGCCGACAGTGAGTGTTCTCCAGGGGCCCAACGGTCTGGCCACCGGCTTCTCCCAGAGTCCCTACGACCTCCCTCGAAACAGCCACATCCCGAGCCACTACGACATCCTGCCCATGCGCCACAGTCCCACACACAGCCCACCGCCTCCAGAGAGCCCACCCAGCTCCCTGCTGTAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-252 Predicted to enable zinc ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MEGF11 (multiple EGF like domains 11).

Ensembl:

ensembl_id ENSDART00000090855

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027292 lncRNA downstream 31521 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026960 lncRNA downstream 264713 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027291 lncRNA downstream 322067 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00027290 lncRNA downstream 350172 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00027289 lncRNA downstream 394032 18744462 ~ 18749405 (-) False XLOC_013362
TCONS_00026439 lncRNA upstream 46998 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00026441 lncRNA upstream 48538 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00027293 lncRNA upstream 477975 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00027294 lncRNA upstream 734456 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027295 lncRNA upstream 880049 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026428 mRNA downstream 39508 19045126 ~ 19103929 (-) False XLOC_013370
TCONS_00026427 mRNA downstream 39508 19045126 ~ 19103929 (-) True XLOC_013370
TCONS_00026426 mRNA downstream 48267 19044873 ~ 19095170 (-) False XLOC_013370
TCONS_00026425 mRNA downstream 48296 19044839 ~ 19095141 (-) False XLOC_013370
TCONS_00026424 mRNA downstream 136803 18995594 ~ 19006634 (-) True XLOC_013369
TCONS_00026435 mRNA upstream 45454 19451070 ~ 19456269 (-) False XLOC_013375
TCONS_00026446 mRNA upstream 57809 19463425 ~ 19484919 (-) False XLOC_013382
TCONS_00026445 mRNA upstream 57809 19463425 ~ 19484919 (-) True XLOC_013382
TCONS_00026447 mRNA upstream 82086 19487702 ~ 19491162 (-) True XLOC_013383
TCONS_00026449 mRNA upstream 406992 19812608 ~ 19819812 (-) True XLOC_013385
TCONS_00026429 other downstream 31686 19110047 ~ 19111751 (-) False XLOC_013371
TCONS_00026421 other downstream 144182 18995247 ~ 18999255 (-) False XLOC_013369
TCONS_00026414 other downstream 322067 18815654 ~ 18821370 (-) True XLOC_013359
TCONS_00026411 other downstream 350172 18787384 ~ 18793265 (-) True XLOC_013363
TCONS_00026410 other downstream 394032 18744462 ~ 18749405 (-) True XLOC_013362
TCONS_00026434 other upstream 17395 19423011 ~ 19423128 (-) True XLOC_013374
TCONS_00026436 other upstream 45966 19451582 ~ 19451651 (-) True XLOC_013376
TCONS_00026437 other upstream 46254 19451870 ~ 19451937 (-) True XLOC_013377
TCONS_00026438 other upstream 46594 19452210 ~ 19452278 (-) True XLOC_013378
TCONS_00026440 other upstream 47135 19452751 ~ 19452881 (-) True XLOC_013379

Expression Profile

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