RNA id: TU14206


Basic Information

Item Value
RNA id TU14206
length 1394
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G12009
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13295573 ~ 13296966 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgatgacagctttgcacactcttggcattctctcaaccagcttcacctggaatgcttttccaacagtcttttataggatttcccacatatggtgagcacttgttggctgcttttccttcactcgggGCGGCAGGTATTAATAGTATTTCATCTCTCCTCAGACTAATATTATTCTGTTGGTCCTGTGGGTACCTTTGCCACTGTTCCACCCCTTGTGTGTTGCGCTGTCATGGTGTATTTGTATTTAGTGGTtggagcattgggctagtaatcGAAAGTTGCacaatcgaatccccgagctgacaaggtaaaactaaGTCATTCtgcctactgttcctaggccgtcattgtaaataagaatgtgttcttaactaacttacctagttaaataaatgttttttaaaaaacaagaaaaacatcccaaaccatctcaattgggttgaggtcgggtgattgtggaggccaggtcctctgatgcaacactccatcactctccttcttggtcaaatagcccttacacagcctgaaggtgtgttgggtcattgttctgttaaaaaacaaatgatcgtcccactatgcgcaaaccagatgggatggcgtatcactgcagaatgctgtggtagccatgctggttaagtgtgccttgaattctaagtaaatcacagatcgtgtcaccagtaaagcacccccacaccatcacacctcctcctccatacatatcatacgttcacctactctgcctctcacaaacacacggcggttggaaccaaaaatcacaaatttggactcatcagaccaaaggaacagatttacaccggtctaatgtcaattgcttgtgtttcttggcccaaacaagtctcttcttcttattggtgtccttttactagttgtttctttgcagcaattcgaccatgaaggcctgattcacgcagtctgctctgaacagttgatgttgagatttgtctgttacttgaactctgtgaagcatttatttgggctaaaatttctgaggctggtaactctaatgaacttatcctaagcagcaggtaactctgggtctttcctggtgcggtcctcatgagagccagttccatcatagcgtttgatggtttttgcgactgcactggaAGAAACTTTCAGAGTTCttaatgttccatattgactaaccttcatgtctttaaagtaatgatggactgtcatttctctttgcttattttagctcttcttgccataatatggacttggtattttggcaaatagggctatgttctgtataccatccctacctggtcacaacacaaccgattggctcaaacacattaagaaggaaagaaattccacaaattaacttttaatgcacacctgttaattgaaatgcattccaggtgactacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14235 lncRNA upstream 3882 13291437 ~ 13291691 (+) True G12035
TU14234 lncRNA upstream 4646 13290727 ~ 13290927 (+) True G12034
TU14230 lncRNA upstream 9780 13285498 ~ 13285793 (+) True G12030
TU14229 lncRNA upstream 10109 13285242 ~ 13285464 (+) True G12029
TU14214 lncRNA upstream 41694 13249144 ~ 13253879 (+) False G12014
TU14207 lncRNA downstream 157 13297123 ~ 13298116 (+) True G12010
TU14237 lncRNA downstream 3664 13300630 ~ 13300849 (+) True G12037
TU14239 lncRNA downstream 6052 13303018 ~ 13303237 (+) True G12039
TU14351 lncRNA downstream 151298 13448264 ~ 13448757 (+) True G12126
TU14363 lncRNA downstream 178937 13475903 ~ 13477133 (+) True G12137
XM_036945729.1 mRNA upstream 121 13259911 ~ 13295452 (+) False LOC110538561
XM_036945735.1 mRNA upstream 121 13278411 ~ 13295452 (+) False LOC110538561
XM_021625573.2 mRNA upstream 121 13278690 ~ 13295452 (+) False LOC110538561
XM_036945550.1 mRNA upstream 71670 13214771 ~ 13223903 (+) False LOC110526761
XM_021625024.2 mRNA upstream 177210 13117319 ~ 13118363 (+) True LOC110538273
XM_021556316.2 mRNA downstream 112316 13409282 ~ 13411290 (+) True LOC110485223
XM_021556420.2 mRNA downstream 128600 13425566 ~ 13431117 (+) True LOC110485322
XM_036946195.1 mRNA downstream 139050 13436016 ~ 13441528 (+) True pdzk1ip1
XM_036946379.1 mRNA downstream 437797 13734763 ~ 13753675 (+) True tm2d1
XM_021589094.2 mRNA downstream 843530 14140496 ~ 14144946 (+) True LOC110508285
TU14216 other upstream 35577 13238613 ~ 13259996 (+) True LOC110538561
TU11995 other upstream 1781191 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 3134287 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 3304031 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 3311109 9983775 ~ 9984464 (+) False LOC110510920
TU14679 other downstream 331897 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 333070 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 895490 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 1382384 14679350 ~ 14679578 (+) True G13380
TU15839 other downstream 1382732 14679698 ~ 14680027 (+) True G13381

Expression Profile