RNA id: TCONS_00026442


Basic Information

Item Value
RNA id TCONS_00026442
length 98
RNA type snoRNA
GC content 0.50
exon number 1
gene id XLOC_013375
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19451070 ~ 19456269 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTGTGATGGTGTAATTTGCGTCCTACTCTACGCACAGCGACAGTTGCCTGCTGTCTTATGCTGGTGTGGAAGGTTGACGATCATTGAGTCTGAGCA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

Ensembl:

ensembl_id ENSDART00000115685

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026439 lncRNA downstream 747 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00027292 lncRNA downstream 342570 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026960 lncRNA downstream 575762 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027291 lncRNA downstream 633116 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00027290 lncRNA downstream 661221 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00027293 lncRNA upstream 429008 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00027294 lncRNA upstream 685489 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027295 lncRNA upstream 831082 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA upstream 850901 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00026461 lncRNA upstream 1143481 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00026432 mRNA downstream 48870 19143437 ~ 19405616 (-) False XLOC_013372
TCONS_00026431 mRNA downstream 48870 19143437 ~ 19405616 (-) True XLOC_013372
TCONS_00026430 mRNA downstream 103694 19143437 ~ 19350792 (-) False XLOC_013372
TCONS_00026428 mRNA downstream 350557 19045126 ~ 19103929 (-) False XLOC_013370
TCONS_00026446 mRNA upstream 8842 19463425 ~ 19484919 (-) False XLOC_013382
TCONS_00026445 mRNA upstream 8842 19463425 ~ 19484919 (-) True XLOC_013382
TCONS_00026447 mRNA upstream 33119 19487702 ~ 19491162 (-) True XLOC_013383
TCONS_00026449 mRNA upstream 358025 19812608 ~ 19819812 (-) True XLOC_013385
TCONS_00026450 mRNA upstream 981238 20435821 ~ 20458840 (-) False XLOC_013389
TCONS_00026440 other downstream 1605 19452751 ~ 19452881 (-) True XLOC_013379
TCONS_00026438 other downstream 2208 19452210 ~ 19452278 (-) True XLOC_013378
TCONS_00026437 other downstream 2549 19451870 ~ 19451937 (-) True XLOC_013377
TCONS_00026436 other downstream 2835 19451582 ~ 19451651 (-) True XLOC_013376
TCONS_00026434 other downstream 31358 19423011 ~ 19423128 (-) True XLOC_013374
TCONS_00026443 other upstream 217 19454800 ~ 19454867 (-) True XLOC_013380
TCONS_00026444 other upstream 561 19455144 ~ 19455241 (-) True XLOC_013381
TCONS_00026448 other upstream 87519 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026456 other upstream 1087267 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026460 other upstream 1130507 20585090 ~ 20594242 (-) False XLOC_013393