RNA id: TCONS_00026438


Basic Information

Item Value
RNA id TCONS_00026438
length 69
RNA type snoRNA
GC content 0.42
exon number 1
gene id XLOC_013378
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19452210 ~ 19452278 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTACATGATGATCTCCACTTCTGGTCCGTGTTTATGAGTCCTATGATTTTAGTGGAAGTTCTGACCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000117472

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027292 lncRNA downstream 340294 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026960 lncRNA downstream 573486 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027291 lncRNA downstream 630840 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00027290 lncRNA downstream 658945 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00027289 lncRNA downstream 702805 18744462 ~ 18749405 (-) False XLOC_013362
TCONS_00026439 lncRNA upstream 336 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00026441 lncRNA upstream 1876 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00027293 lncRNA upstream 431313 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00027294 lncRNA upstream 687794 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027295 lncRNA upstream 833387 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026432 mRNA downstream 46594 19143437 ~ 19405616 (-) False XLOC_013372
TCONS_00026431 mRNA downstream 46594 19143437 ~ 19405616 (-) True XLOC_013372
TCONS_00026430 mRNA downstream 101418 19143437 ~ 19350792 (-) False XLOC_013372
TCONS_00026428 mRNA downstream 348281 19045126 ~ 19103929 (-) False XLOC_013370
TCONS_00026446 mRNA upstream 11147 19463425 ~ 19484919 (-) False XLOC_013382
TCONS_00026445 mRNA upstream 11147 19463425 ~ 19484919 (-) True XLOC_013382
TCONS_00026447 mRNA upstream 35424 19487702 ~ 19491162 (-) True XLOC_013383
TCONS_00026449 mRNA upstream 360330 19812608 ~ 19819812 (-) True XLOC_013385
TCONS_00026450 mRNA upstream 983543 20435821 ~ 20458840 (-) False XLOC_013389
TCONS_00026437 other downstream 273 19451870 ~ 19451937 (-) True XLOC_013377
TCONS_00026436 other downstream 559 19451582 ~ 19451651 (-) True XLOC_013376
TCONS_00026434 other downstream 29082 19423011 ~ 19423128 (-) True XLOC_013374
TCONS_00026433 other downstream 77255 19374839 ~ 19374955 (-) True XLOC_013373
TCONS_00026429 other downstream 340459 19110047 ~ 19111751 (-) False XLOC_013371
TCONS_00026440 other upstream 473 19452751 ~ 19452881 (-) True XLOC_013379
TCONS_00026442 other upstream 2208 19454486 ~ 19454583 (-) True XLOC_013375
TCONS_00026443 other upstream 2522 19454800 ~ 19454867 (-) True XLOC_013380
TCONS_00026444 other upstream 2866 19455144 ~ 19455241 (-) True XLOC_013381
TCONS_00026448 other upstream 89824 19542102 ~ 19542231 (-) True XLOC_013384