RNA id: TCONS_00026447


Basic Information

Item Value
RNA id TCONS_00026447
length 830
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_013383
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19487702 ~ 19491162 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACTTTGTGCGCATGCGTGCTTGAGTGCGCGTGACTTGGTTCTTCAGAATGCTACAACTGTGGagttaaatagaaaacaaataaacactttAATCGGAATCATGCACGTTCCGCAGAGCGTGTCGAACCAATAAATAATGCTGTAGAAACGCTTGTCCACTATGTTGAGTCGACTTCAGGAACTCAAGAAGGAAGAGGAGACTCTTCTGAAGATAAAAGTCATGCTGCAAGATCAGCTTAACAGACTAAAGTTTGAGGAAGGGACACTGAAGTCAATGATTAATGCTCAGACTGAAGAAGATCCAAGTGAAGCTCCTGCCCCTGAGGAGGAAGTAAACCTAGATGACGAGACCGAGATCAACCAAACCAAACTAGTATTAGGTGCTCAAACAGACTATGACATGGAAgaagatgaagaggaggaggaagaggaagatgatgacgatgatgcTGATGAAGATCTCAACATGGTGCTAGAAGACGAGGAGGAAGACGATGATGACTACTGACTGAGccgaggaggaaaaaaaaaacgagtgTTTTCATGTACTCCTGTGATTTAGCTGTGTAATCTGCACATTTGGCATGCTGAAAGAGACTAGTACTGTCTTAGATTGGTGTTGATTAGACAAACTGTTGGTTCACACATCTCTAAAATCCTCCACAAGTATGTGTAGCACAAATACAACTTCTCCTATTACTGTGCTGTTAGCCAAGCCTGCACTTTACGTATTTTTAAAAAACCGAAATTGCACCAAACCTGTTTTGTAGTGTTTACCAAGCGATGCTGTATCATGTGggctttatttaatattgtgcTGTATTGCTTT

Function

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process
GO:0006384 transcription initiation from RNA polymerase III promoter biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-041111-50 Predicted to act upstream of or within transcription by RNA polymerase II and transcription initiation from RNA polymerase III promoter. Predicted to be located in nucleus. Orthologous to human SNAPC5 (small nuclear RNA activating complex polypeptide 5).

Ensembl:

ensembl_id ENSDART00000090413

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026441 lncRNA downstream 31502 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00026439 lncRNA downstream 33963 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00027292 lncRNA downstream 375786 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026960 lncRNA downstream 608978 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027291 lncRNA downstream 666332 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00027293 lncRNA upstream 392429 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00027294 lncRNA upstream 648910 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027295 lncRNA upstream 794503 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA upstream 814322 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00026461 lncRNA upstream 1106902 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00026446 mRNA downstream 2783 19463425 ~ 19484919 (-) False XLOC_013382
TCONS_00026445 mRNA downstream 2783 19463425 ~ 19484919 (-) True XLOC_013382
TCONS_00026435 mRNA downstream 31433 19451070 ~ 19456269 (-) False XLOC_013375
TCONS_00026432 mRNA downstream 82086 19143437 ~ 19405616 (-) False XLOC_013372
TCONS_00026431 mRNA downstream 82086 19143437 ~ 19405616 (-) True XLOC_013372
TCONS_00026449 mRNA upstream 321446 19812608 ~ 19819812 (-) True XLOC_013385
TCONS_00026450 mRNA upstream 944659 20435821 ~ 20458840 (-) False XLOC_013389
TCONS_00026451 mRNA upstream 945130 20436292 ~ 20458412 (-) False XLOC_013389
TCONS_00026452 mRNA upstream 950216 20441378 ~ 20444296 (-) True XLOC_013389
TCONS_00026453 mRNA upstream 968726 20459888 ~ 20466061 (-) True XLOC_013390
TCONS_00026444 other downstream 32461 19455144 ~ 19455241 (-) True XLOC_013381
TCONS_00026443 other downstream 32835 19454800 ~ 19454867 (-) True XLOC_013380
TCONS_00026442 other downstream 33119 19454486 ~ 19454583 (-) True XLOC_013375
TCONS_00026440 other downstream 34821 19452751 ~ 19452881 (-) True XLOC_013379
TCONS_00026438 other downstream 35424 19452210 ~ 19452278 (-) True XLOC_013378
TCONS_00026448 other upstream 50940 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026456 other upstream 1050688 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026460 other upstream 1093928 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026464 other upstream 1142627 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026468 other upstream 1355028 20846190 ~ 20846313 (-) True XLOC_013398

Expression Profile

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