RNA id: TU15838


Basic Information

Item Value
RNA id TU15838
length 229
RNA type TUCP
GC content 0.36
exon number 1
gene id G13380
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 14679350 ~ 14679578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctgtcagtctgcatagagctgccagtctgcatagagctgccagtctgcatggagctgccagtctgcaaggagctgccagtctgcaaggagctgccagtctgcattgagctgccagtctgcaaggagctgccagtctgcaaggagccgccagagctgccagtctgcaaggagccgccagagctgcaagtctgcaggatgccgccaaagctgccagtctgcaaggagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15833 lncRNA upstream 12447 14666655 ~ 14666903 (+) True G13375
TU15828 lncRNA upstream 22985 14655775 ~ 14656365 (+) True G13371
TU15827 lncRNA upstream 24730 14654353 ~ 14654620 (+) True G13370
TU15822 lncRNA upstream 34509 14644591 ~ 14644841 (+) True G13366
TU15821 lncRNA upstream 35529 14643605 ~ 14643821 (+) True G13365
TU15842 lncRNA downstream 5915 14685493 ~ 14685712 (+) True G13383
TU15845 lncRNA downstream 9459 14689037 ~ 14689301 (+) True G13386
TU15846 lncRNA downstream 10510 14690088 ~ 14690289 (+) True G13387
TU15848 lncRNA downstream 13614 14693192 ~ 14694338 (+) True G13389
TU15849 lncRNA downstream 17552 14697130 ~ 14697793 (+) True G13390
XM_036947517.1 mRNA upstream 183502 14350545 ~ 14495848 (+) False LOC110486505
XM_036947567.1 mRNA upstream 183502 14350545 ~ 14495848 (+) False LOC110486505
XM_036947684.1 mRNA upstream 183502 14429748 ~ 14495848 (+) False LOC110486505
XM_036947621.1 mRNA upstream 183502 14431701 ~ 14495848 (+) False LOC110486505
XM_036947732.1 mRNA upstream 183502 14464252 ~ 14495848 (+) True LOC110486505
XM_036948336.1 mRNA downstream 314359 14993937 ~ 15003427 (+) True LOC110487584
XM_021559606.2 mRNA downstream 336560 15016138 ~ 15019092 (+) False LOC110487655
XM_036948429.1 mRNA downstream 336847 15016425 ~ 15019092 (+) True LOC110487655
NM_001160664.2 mRNA downstream 344841 15024419 ~ 15026535 (+) True elav1
XM_036948626.1 mRNA downstream 395606 15075184 ~ 15080304 (+) False LOC110487930
TU15077 other upstream 471336 14192456 ~ 14208014 (+) True LOC110486057
TU14688 other upstream 1047460 13630036 ~ 13631890 (+) False G12410
TU14679 other upstream 1048062 13628863 ~ 13631288 (+) False G12410
TU14216 other upstream 1419354 13238613 ~ 13259996 (+) True LOC110538561
TU11995 other upstream 3164968 11476664 ~ 11514382 (+) True LOC110523899
TU15839 other downstream 120 14679698 ~ 14680027 (+) True G13381
TU15850 other downstream 20598 14700176 ~ 14700730 (+) True G13391
TU15897 other downstream 132193 14811771 ~ 14812624 (+) True G13434
TU16116 other downstream 281976 14961554 ~ 14962003 (+) True G13639
TU16507 other downstream 780326 15459904 ~ 15467988 (+) True sass6

Expression Profile