RNA id: TCONS_00027294


Basic Information

Item Value
RNA id TCONS_00027294
length 4321
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_013387
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20140072 ~ 20149097 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTAAACAGTTAATGACCTTTATCCACCAATTGAACACAGTTCAGGATGTTTACATGACCTTACACGTTGAGCGTAAGAGCTTGCATGTAAATGCACCCATTGATTGATCGCTAATCTGAATATTGGAGTAGAATGCGGCCATTTCGATGCGCATTAGGGCTCAGAGAGCTTTTTTGAGAGAAAGCACTCTAATGGAGACACAAGGACACGAAAACTCACACTGAGAAAAGAGCAAGATCTCCAAGACTCTTAATGGCAGACATAATAGCAGAATAGCCATTTTGCTATATGGTACGGTCAAAACATAGCAGGAAAAATCTGTATTGACAGAACCTTAGAGAACATAACAAGAGGGCTGGGGTGAACGGATGGATTTCATTTCCACAGCAATCTGTCTGACAATGGCACGTCTTTAAAAAAAGGACTAATTTCATCGATTAAAATCGAAGAGTGCAATTATGATGGCATTTGTCAGGCGTTTAATATGAGCTGCTCTTCCTTGCCAGCGCTTAACAATGACACAGCAGAAGAGGCCAGCTGAGTTAATAGCAGGACCATTTCTCTGAGACCAATACTCAGAAACCCCCTCCAGGGCCCAGTCAATGTCACAGCTTCTCGTGTCGCATCATTTCCCTTGCCAGGAGGGGGAGAGAGGCCAAGTATTGATCAGCCTGTAATCAGACAAGCTGTTTGGAGCAGCAGGAAAAACTCCTTGCAGAAGTGCCTCTTGGCTTCACCGGAGATGGAGTGCAGTTTTTGTAGCCTTGTTGGAGGGATGAGTGGGGAGGGAGATGGCAGTGATCCCCTCGGCTGACACCATCCATTAAGTCCGGCCTTGTCTGACAGCGCACATCTGATCTGCTGGCTGAGGGAGAGAGACGAATGTGGACTTCTCTGAGGTGCATCAATGACAGCATCACCAGGCGGACCACAGAGAACCACACACTAATGGCATAAAGAGTTTTGGGATTGCTGGAATAATCTAATTTATAATTGAGTACGACACGTGAACGGTGGGGTCATAAAATCAGAGGAGAAATGACAAGAAAGCAAACAGCCTCCGAGTGTTTTCACAGCGagcagaaggaggaggaggaggaggagtgctGTGTGGGAATATGCAAATGAGACAGAGACAAAGAGACAGGGAGTTATAAGAGAACATAAACAAAGCTCTGTAAACAAACCTCCTCAGGTCACTCCGCAGTAGGAGAAGGAGATTAAAATAGGAGGGTGCGAATGTGTTTGTATACGCCTGTGAAGGAGGAGGAGGTGCATCCACATCATCACACAGCTCCTCATGACTCCCCGCTAAAGCACGGTACCTGCACGCGTGGTTGCTATGGAGATCCAGTGTGGCGTAAGAACAGAGGGACCAACCGCTGAACCGGCTCTGGCTCTTAACCCGGAGAAGGGAAAAAAAGCGCACACACCAACAAAGGGAATGATTTATTAAGTCCACTGTATTCTAAGCCCCATTATCCAACCCACATAAAACCTGCAAGCGTTTCAACTGATCTGATTTATGTTGAAGGCAATCTCAAAGGACACCTCCCTTTCCAAGATGCTCTCTTATTATCCTCGCCTGGCTGGGCTGAGCGGAAAAATGACATGTCATAATAATCTTGAGAACGGCAATCGGATGGAGCGGAAACGCACACGCTCCCCACCTTATTTACAGGCTGAAATGTTTTTCGTCGGGGCGAAAAAGCCTGACATAATTTCCttataaataattgacttctCCCATGTTAAAATCTCCTGAGAGGCTTTGGGCTTTATTCACAAGAGGCCACTGCAGCATGCGCTGCAAATTAGCCTTTCACCGACGCCTCGTCTGCTCGCCAGTGAACAATGCACCGAGAGACTCGCTCTCCTCCCTTTATGCCTGTCCCCAAGTAATAACCTTCAACTAACCTTTAAACCTCGGTGAATAATTTAAATCCTATTTTCATATCAATGGGGGGTATTTTATCCGTATACTTTGCCGTCAGAGGGAGGCATAATAAAGTTTTCCCATGTGATTGAGGGAAGAGGAAAGGGGGGGTGGGGATGAGTGAAAAACGAGCGgctgatagagagagagagagagagagaggaaggaggAGGTGGAGGGAGCTGGAGATGCTATCTGAAGACATTAATGCAAGCATGAATTATTCAGTAATGACTACAAGatctgtcataaaaaatgctgctaacATCTGCAGCGTGTTGCGAGGGGGCTGTGGGGAGTGGGCAAGCCGCCGAGGAAAGGCGCTGAAGATAAACATGACAAATTGGCAGATCATCTGTTCAATTAGGACAGCGGAGCAGGTGCACCCAGCGAGCCAAGCTGTACCACACGGTGACACACTTACCAGCCAAAAACCAAGGGCATGATGGGAAATACCTTGTTTGCATGACAGTGATTTAGAGCAGTGTGCCATTGGAtatccacagaaaaaaaaactagggggagaaaaaaaaaatctgatattccCCTTGGTGCTCATTAAAATTCGACTGCAGCCTCcaccctctctctttttttttctctcctcgctctctctctcgctcgctccaTCTTTGTGCTCTTGGCTCTCTCTTAGCTGCCTCCCTGGACCTTCCAGGATCATCTCTTATTAATTCATAAAACATACTGCTCCAGTGATTGGGCCCTGGGAGCAGCAGAGCAGCAAAACATGAGATATGGGAAAATATCACACGTGTCTGCAGCCAGGCtgcgagagagagcgagagagagagagagagtaagtgGTGAACAGGGAACGAGGACTGTGTATATGAGACAGCAAGGGGGAGGGGGGGGCAGGAAAGgaggtagagagagagagaaagagggaaacATGTTTTGAAATATTAATCCATGGCTCTGGCCGTGGGCTGGTACACAGAGATGAAAAAGGCGAGAGAACCTTTGAAGCGGGAGGGGATGTTCTCTGCTGTCTCAAGGTAGACTACGCAGTCGGCCATGTTGGAAAGTAGAGGAGAAGAGACATGACAGCACTCCGAATGACTAACTTTCACCGCGGCCTCTTAATATTTCAAAGACGCCTAATTGGTTCGGCAACGTCTGGTCCTTCTAAAAAGATCCTGGCAATCTGCCTGAATGTACGCCAATTGCTTCAATCCAAATATTTCCTCGTGAATTTCCATCGCAAATGGATGCTCTTCAAAAACAAATTCGCTAAATCACTCCGAAAAGAGCACATTGAGGAAAGTAATTATCATTAAGACACACTTTGGCTAAGCATCTTGATGAACATGCTTTTCTATATCCAGAAGAATAACATTGAGAGGGCatcctctctctttctttctctctctctctcgctcgctcatTTTCCACCGTGCAGCACCCTGCTGGGAAACTCTAAATTACCCACAGTCTGGCTATTCTGTACTCATAATAATGataaagtttcttttttctaattATGCAAAGAACACTCAATTAGCATAACTCGTCCTCTGTGTCACTACAAACAGCAGAACGCCCCGAGGGGCTGCCATAGTTTCGCTGCAcggctgttgtttttttttttttccttcctctCATTGTTTTTCAGCGCGGTAATGAAGATATTTGTTAATGAAGATATGAACAAGCACCAAGACCACCTTCTCCCCCACCGACTGTGCAGGTGGATGCCGCAGGGAAATAAAACGCTGGTTTAATCATCGCCCCCTTCAGGTCTGCTGCGGTACCGCAGTGACTCAGGCCTGCAGGGGAGATTAAAGATGATCAAATAAAAACGGATCAAAAACACCAAAATTCTTAACCCTACCAAGCAGAATTTTACACCTTTGGGGGGAGGGGGATTGTTAAAAAGCAAGCTGCACTACTTAAGACCTGTTGGCGCTTCTGTTCAGGATGTGATAACGTCCATCAAAAAACACCCCGGGTTCAAATATACATTTTGCAAACACgtgcgcgtgcacacacacacatgcatgtaggCTAGGCAGTCCAGCTCTCATCAAGAGGATGCATAGCAGAAGCATATGTCACTATAAATTCTGAATCCATAGAGACATTGGCTAGAGGCGGGAGACAGACTGGAAATAATGGACATGGAGGAAGTATAGAAAGATGAGATTGCAGTTGAGCTTAAATAATTAGGCATGACATCGCTAATAAGTACACAATGAACCCTGAGCTGCTGTGTTGGTGATCTGTCTGTGTAACTCTGGAATCTGGGATGCTCGCTGACAGAAAAGAGAAAATTACTGTAGAAAAGAAGATGAATACAAAATTGATTTATGGAGCCTGAACATAAGGGTCATTTCTGTCATACTTTTCATTGTCTCATGTg

Function

GO:

id name namespace
GO:0010498 proteasomal protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005838 proteasome regulatory particle cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0000502 proteasome complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027293 lncRNA downstream 255778 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00026441 lncRNA downstream 683872 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00026439 lncRNA downstream 686333 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00027292 lncRNA downstream 1028156 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026960 lncRNA downstream 1261348 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027295 lncRNA upstream 136568 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA upstream 156387 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00026461 lncRNA upstream 448967 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00026963 lncRNA upstream 1015729 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA upstream 1015729 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026449 mRNA downstream 320260 19812608 ~ 19819812 (-) True XLOC_013385
TCONS_00026447 mRNA downstream 648910 19487702 ~ 19491162 (-) True XLOC_013383
TCONS_00026446 mRNA downstream 655153 19463425 ~ 19484919 (-) False XLOC_013382
TCONS_00026445 mRNA downstream 655153 19463425 ~ 19484919 (-) True XLOC_013382
TCONS_00026435 mRNA downstream 683803 19451070 ~ 19456269 (-) False XLOC_013375
TCONS_00026450 mRNA upstream 286724 20435821 ~ 20458840 (-) False XLOC_013389
TCONS_00026451 mRNA upstream 287195 20436292 ~ 20458412 (-) False XLOC_013389
TCONS_00026452 mRNA upstream 292281 20441378 ~ 20444296 (-) True XLOC_013389
TCONS_00026453 mRNA upstream 310791 20459888 ~ 20466061 (-) True XLOC_013390
TCONS_00026454 mRNA upstream 367430 20516527 ~ 20532339 (-) True XLOC_013391
TCONS_00026448 other downstream 597841 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026444 other downstream 684831 19455144 ~ 19455241 (-) True XLOC_013381
TCONS_00026443 other downstream 685205 19454800 ~ 19454867 (-) True XLOC_013380
TCONS_00026442 other downstream 685489 19454486 ~ 19454583 (-) True XLOC_013375
TCONS_00026440 other downstream 687191 19452751 ~ 19452881 (-) True XLOC_013379
TCONS_00026456 other upstream 392753 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026460 other upstream 435993 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026464 other upstream 484692 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026468 other upstream 697093 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026472 other upstream 871814 21020911 ~ 21024571 (-) True XLOC_013400

Expression Profile

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