RNA id: TCONS_00027295


Basic Information

Item Value
RNA id TCONS_00027295
length 893
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_013388
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20285665 ~ 20319873 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAACAATACTGTCTCAATCATTCTCCTCAGTTGGTTGAAGGTTACCAGGGGCAAGAGGGGTAACAAATGGACCGGGCGCAACGTCTGAGAGATAGCAGTCTGAAGGCCAGATAATAGGCTGTCATAATGGACAATACAGAGAGAAAAAGCTCCAGAGATCAGCCGAACCCGAAGAACAAaTGCACTGAATAAACAAGGCTGTATCCCTGGCCCAGAAATGCTTCAAAGACTGCAAAGTCTGTTGGGAATGCTTCAGAAATGTAGAGCAGTGTTGACTGCTTAGCTTTGCATTTCAACAAAGCTCCCGGTTCTGAGCCCCATGCAGATCTCTCGTCGAGCATACAGGCCCATGTAACCAAGCAGAGCTCTAAGAGGATgagctccctctctctctttctctggcgCACACATACACAGCACTGCAATATATTAATGTATGCTTTCTTATGTGCCTATTCCCAGAATCACTCATACAAACTTGATgctctttttttttgcttttctgccCTCTTATTTTCTCACTGTGCTCCAGGACTCCTCTTTAAGGCTTCTCCTGATTCACAAGCGTCAATGTTTAGGGAGTTGTTTACACTACAGTTCGAATAATGATGAAATCATAAAAAAGTTTGAAACACTGAAACATTTGATTTGAAATGAATTGTTTTTCATCATCTGCTCGCCTATGTTGTTTGACACTTGGTGCGGCACTTCTCTGTAGGACACTGAAAATATAGGCAATACTTTCGATTAAGGGACACATATTAGCACGGGCATTCTGTGGCTCTATTTGTAAAGCACAATTTAATGCCTAGTTCTGGATAACCATATTCTAGTTTGCATAAAGGCATAGGTCACCCAAATATCAAATGTGTTGTTAATTTACACACCTTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027294 lncRNA downstream 136568 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027293 lncRNA downstream 401371 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00026441 lncRNA downstream 829465 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00026439 lncRNA downstream 831926 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00027292 lncRNA downstream 1173749 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026461 lncRNA upstream 278191 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00026963 lncRNA upstream 844953 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA upstream 844953 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026498 lncRNA upstream 1612380 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 1624332 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00026449 mRNA downstream 465853 19812608 ~ 19819812 (-) True XLOC_013385
TCONS_00026447 mRNA downstream 794503 19487702 ~ 19491162 (-) True XLOC_013383
TCONS_00026446 mRNA downstream 800746 19463425 ~ 19484919 (-) False XLOC_013382
TCONS_00026445 mRNA downstream 800746 19463425 ~ 19484919 (-) True XLOC_013382
TCONS_00026435 mRNA downstream 829396 19451070 ~ 19456269 (-) False XLOC_013375
TCONS_00026450 mRNA upstream 115948 20435821 ~ 20458840 (-) False XLOC_013389
TCONS_00026451 mRNA upstream 116419 20436292 ~ 20458412 (-) False XLOC_013389
TCONS_00026452 mRNA upstream 121505 20441378 ~ 20444296 (-) True XLOC_013389
TCONS_00026453 mRNA upstream 140015 20459888 ~ 20466061 (-) True XLOC_013390
TCONS_00026454 mRNA upstream 196654 20516527 ~ 20532339 (-) True XLOC_013391
TCONS_00026448 other downstream 743434 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026444 other downstream 830424 19455144 ~ 19455241 (-) True XLOC_013381
TCONS_00026443 other downstream 830798 19454800 ~ 19454867 (-) True XLOC_013380
TCONS_00026442 other downstream 831082 19454486 ~ 19454583 (-) True XLOC_013375
TCONS_00026440 other downstream 832784 19452751 ~ 19452881 (-) True XLOC_013379
TCONS_00026456 other upstream 221977 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026460 other upstream 265217 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026464 other upstream 313916 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026468 other upstream 526317 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026472 other upstream 701038 21020911 ~ 21024571 (-) True XLOC_013400

Expression Profile

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