RNA id: TCONS_00026450


Basic Information

Item Value
RNA id TCONS_00026450
length 4135
RNA type mRNA
GC content 0.44
exon number 23
gene id XLOC_013389
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20435821 ~ 20458840 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttttgtttgtttttctttattttttattaatgcttAAAGAACAAAGTACacaacaatacaaatacaaaaagaaagaaaagagagcATCAGGGGTGTACAAAATACAAACTAACGTTATAagacaaacaaatatatttgtaagtATGCATTCGGGTAAAGGGAAATGTGAGATCACAGGATCTTGAAGGTTTcatgtaaaacaatgctttttaaATTGATATTACTTTTTCATTCAGTAATTAAAAATCGTATACTCCTTAAGAATATTTTAAATcttctttgcattttttattaacaGAGTTCATTGTTTTCCTTTATGTAAGCTCCTGGCTTAAACCGGAATTTGTCAAGCGCCCATTAGGCGGGGCTTAAGGCGGGACATCCGCTCTTCTGAGGAGTGTTTGAGCTCGCTGATTGGTCACATTTGAAAAATCTGTGTCTGATGCGGACGAGGGAACGTTTGAAACTTCGGATTTGTATACGGTCAACAAGAAGGTAACAGCGTCGTGGAATTAAACTAAAACATCTCAGCATGATTAGGCAAGCGAAGGGCAAGACCCCCCGCCGCCCTCCTCCAAAAAAACCTTCAAACAACCAAAAGGACCCTGTTGGAGTGTATTGTCGAGTTCGGCCACTGGGTGCTGAAGATGAGGAATGTTGCATTGAGGTTATAAGTAACACCACCATTCAGTTACATGCTCCTGATGGACTCAAAGCCAACAGGAATGGGGAATTCAAAGAGACACAATATTCCTTCAAAAAAGTGTTTGGAATTAAAACGACACAGAGGGAATTATTTGAAGATGTTGCTAAACCTCTTGCCCAAGACCTCATTCATGGAAAAAATGGCCTGTTGTTTACCTATGGCGTCACCGGCAGTGGTAAAACTCACACAATGACAGGCTCACCGGGTCAGGGTGGGTTGCTTCCACGCTCTCTCGACATGATCTTCAACAGCATCGGTCCTTACCAGGCCAAGAGATATGTTTTCAAGCCTGATGATAAAAATGGCATGGAGGTGCAGAATCAGGTTGATGCACTGTTGGACCGACAGAAGCGAGACAGTCAGACATCTGTACCAAAGACCCCAAACACAagACGAGTTGACCCAGAGTTTGCTGACATGATCAGCCCAGAGGAGGCTTGTAAGGCTGAAGGGGTGGATGAGGACAGCAGCTACAGTGTCTTCGTTTCTTACATTGAGATTTACAACAACTACATCTATGACCTCCTAGAGGAGACCCCCTTTGACCCCATAAAGCCCAAgTGGAATGGTGCAGGCACACCTGTGCGAAACATCACTGAGTTCATACCACCCCAATCCAAAATACTGCGTGAAGATCAAAATCACAACATGTATGTGGCCGGGTGCACGGAGGTTGAGGTCAAGTCAACAGAGGAAGCTTTTGAAGTCTTTTGGCGAGgTCAGAAGAAGCGTAGGATTGCAAACACGCAATTGAACCGTGAGTCCAGCCGCTCTCACAGTGTGTTCATTGTTAAATTGGCACAAGCACCACTGGATGCAGATGGAGACAATGTGCTTCAGGATAAGAATCAGGTGAACGTGAGCCAGTTGTGTCTAGTGGATCTAGCTGGTAGTGAACGCACTAGCAGAACCCGAGCAGAGGGCAACAGACTACGTGAAGCAGGCAACATTAATCAATCTTTAATGACTCTGCGCACGTGTATTGAGGTACTGCGGGAGAACCAGATGTGTGGCACCAACAAGATGGTTCCCTACAGAGACTCCAAAGTGACCCATCTATTCAAAAACTACTTTGATGGAGAGGGCAAAGTGAGAATGGTGGTGTGTGTAAATCCAAAAGCTGATGATTATGAGGAGACGCTGctGGTGATGCGCTTTGCTGAGATGACTCAGGAGGTGGAAGTGGCCCGGCCTGTTGACAGACCTATCTGTGGCTTTGCTGCTGGTCGCCGACAGAGAAACCAGGCCTTCAAAGAGGAGCTGACCCGCAGGCTAGAAGAGCGTGGTGGTCCTGTAGATGGAGATTGTCCAACAGTATTAAATCAGTTACTTCAGGCATTTCCTCCACTTCCTCCCTGTGAGATCTCTGGCCCTAATGATGACGTCACTCTACCCAGACTCATTGAGGCCTTGGAGAAGAGACACAAGATTCGACAGATGATGATTGAGGAGTACAATAAAACTGCCACcatgctgaagtctgttcttcAAGAGCAGGACGGCAACATTCTCTCCAAGGAGAACGTCATCCAAGAGCAGCGTGGCAAACTTGGAGAAAAAGACAAAATGCTCCAAAACCAGAAGAACGAGATTGATCGCCTGGAAAAGAAATCCAAGATGCTGGAATACAAGATTGACATCCTGCAGAAAACCACCAACATCTATGAGGAGGACAAGAGGTCTCTGCAAAATGAACTGGAGAGCAGAGAACAGAGGCTACAAAGGGAAATGTCTGAGAAAAGACGCATAGAGGCTCGCATGCAGGGCATGGTCTCTGACACCAAGCTCAAGTGGGAGAAGGAGTGTGAGAGGAGGGTAAACGCCAAGCAGCTGGAAATGCAGAATAAGCTGTGGGTGAAGGATGAGAAACTCAAACAGCTCAAAGCTATCGTGACCGAAGGGAAGACCGAGAACCGACAACCCCAGCGGCCCTCCAGAGAAAAGGACAAAGTGCCCCCTAAGAGATCTGCTTCCCCGTCACCTGCTCCTACTGGGCCGCCGGTCCGGCCTCTACACAGACGCTCGCACTCCGCAGGTGGGGAGAGGTGGGTTGATCACAAACCTACCACTAACGTGGACCTGGATACAGTCATGCAACCAAACATCCCCAATGCCATCAAAGTGAACGCTCCCAACGAGAAAGCTCTGTCCAAGTGTGACAAGTATGTTCTGACACATCAGGAGGTGGCATCAGATGGAGAGATTCAGACCAAGCTAATCAAGGGTGAAGTGTTCAAAACTAGAGGTGGAGGACAGTCTGTTCAGTTCACGGATATTGAAACACTCAAGCAGGAAACGCCTGTTGCGGCCAGCCGTAAGAGGCGCTCATCAGAGTCTGGCCCAGACAGTGAGCCTATGGAAGGAAACTGGACTGATGTGGAGACCAGGTGCTCTGTGGCAGTGGAGATGAGAGCTGGCTCAAATCTTGGACCTGGATACCAGCATCACGGCTATACAAAacGCAGAAAACCTTGAGTGTGCTCTAGTATTGCCATCACAGCAGAGTCATTTCCTCTCGAAGCCTCTCATCACTGTGTGCAATAGCAAATTCACTttataatatttaactttttaaaatgctttttttatgtaaaaatcttTTTATAGAAGTCAAAACAGGTTCATCAAAGCTGTTTTTATACTGCATATTCTACCGGGGTGTTGCCATGAAAAATTCACCTGAAGTGTGGGTGTTAAGTGTTATAAATGTTTGGTTTTCTAACTGTCTTTTAGACACATTAGGGTATTTTCGTgtatcatttttatatatatgtttgtgtatacTCTTGCGTACAGGCAGTTAAGACAATCGAAACATTTGAAGGTGTTTAACCAACCTTTAGCAATAGTCATTCTTATGACTTCTACAGGCAGCACCCTGAGAAAGCACTGTTTTCATGTAGTTTCACCTGTATGATACTGCTGCACACAACTGTCAATAAACAGCATTTGATTTATGCTTGTTTCATTTTGCACTTCTGCTGGTTTTCATTGTCATCTTTCTGTAATATTGGAGAGAGTCTGATACTTAGCAGTAGATGGCAGCAGTGTTTAAACTATTGAGCTTAAGAGTTTGAATTCCTGCCCTGGATGGTGTTTGTTATTGCATGTAGTCAATGTGGGATGCTTCAAATATGAGACCtagaatttttgttttaattgctGGTTTATATATGAAGTGTAAAAACCATGATTTCATCAGATACACAATTCTGCGCTGTCTTGGCGAAATGTTTTTAATGTCCTtttcataacaatataataattcaaTTTCAATAAGTGAACtttcaaggaaaaaaaaattcagccaGTATTATGGAGTAATTGATGTTAGTTGATGAGTTGTTAGTGTTTTAGGAGGTTACTTTTTTTCTGAAGAGAAATGAAATGCACTTCTTAAAGGATTATCACGGTAATACAAGCATTCA

Function

GO:

id name namespace
GO:0072383 plus-end-directed vesicle transport along microtubule biological_process
GO:0036089 cleavage furrow formation biological_process
GO:0000915 actomyosin contractile ring assembly biological_process
GO:0007018 microtubule-based movement biological_process
GO:0051256 mitotic spindle midzone assembly biological_process
GO:0047496 vesicle transport along microtubule biological_process
GO:0040016 embryonic cleavage biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko05206 MicroRNAs in cancer
ko04131 Membrane trafficking
ko03036 Chromosome and associated proteins
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-991019-4 Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within cytoskeleton-dependent cytokinesis; embryonic cleavage; and vesicle transport along microtubule. Located in several cellular components, including cleavage furrow; microtubule; and nucleus. Is expressed in proliferative region. Orthologous to human KIF23 (kinesin family member 23).

Ensembl:

ensembl_id ENSDART00000177125

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027295 lncRNA downstream 115948 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA downstream 116026 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00027294 lncRNA downstream 286724 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027293 lncRNA downstream 551527 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00026441 lncRNA downstream 979621 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00026461 lncRNA upstream 139224 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00026963 lncRNA upstream 705986 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA upstream 705986 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026498 lncRNA upstream 1473413 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 1485365 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00026449 mRNA downstream 616009 19812608 ~ 19819812 (-) True XLOC_013385
TCONS_00026447 mRNA downstream 944659 19487702 ~ 19491162 (-) True XLOC_013383
TCONS_00026446 mRNA downstream 950902 19463425 ~ 19484919 (-) False XLOC_013382
TCONS_00026445 mRNA downstream 950902 19463425 ~ 19484919 (-) True XLOC_013382
TCONS_00026435 mRNA downstream 979552 19451070 ~ 19456269 (-) False XLOC_013375
TCONS_00026453 mRNA upstream 1048 20459888 ~ 20466061 (-) True XLOC_013390
TCONS_00026454 mRNA upstream 57687 20516527 ~ 20532339 (-) True XLOC_013391
TCONS_00026455 mRNA upstream 82476 20541316 ~ 20560007 (-) False XLOC_013392
TCONS_00026457 mRNA upstream 84337 20543177 ~ 20560059 (-) True XLOC_013392
TCONS_00026458 mRNA upstream 122845 20581685 ~ 20608300 (-) False XLOC_013393
TCONS_00026448 other downstream 893590 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026444 other downstream 980580 19455144 ~ 19455241 (-) True XLOC_013381
TCONS_00026443 other downstream 980954 19454800 ~ 19454867 (-) True XLOC_013380
TCONS_00026442 other downstream 981238 19454486 ~ 19454583 (-) True XLOC_013375
TCONS_00026440 other downstream 982940 19452751 ~ 19452881 (-) True XLOC_013379
TCONS_00026456 other upstream 83010 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026460 other upstream 126250 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026464 other upstream 174949 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026468 other upstream 387350 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026472 other upstream 562071 21020911 ~ 21024571 (-) True XLOC_013400

Expression Profile

//