RNA id: TCONS_00026456


Basic Information

Item Value
RNA id TCONS_00026456
length 2859
RNA type nonsense_mediated_decay
GC content 0.45
exon number 9
gene id XLOC_013392
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20541316 ~ 20560059 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGACAGCGTACGCCTGGGCAGCGTCTGTTCAGCTGTctggatttactacatttcaGGACCGTTTGAATCGCAAGCGCTATGTTCCGTTTCACGCGTCGCGTTTGTGGCTCAGACTGACTGCTCATCACCGAGCGTTACTTTGTTTATTTCCACCTTTATCAGTATCGATAAACAAGAGTATGGTTGAGCAGTCGGATCGCGCTCCGCTGCTGGACTGGGAGGAGATCCCCCCGGCCGAACTTGCTCCATCGGTTCCATCACCGGACACTGGCGATTCATTACAGTCCGGGCTATCAAGTTACCCAACTGAGGCCACATTAGGGGCAGATATCACCTTGAACACGAGCCCGACGAGACCGAGCAGTGTAGCAGCTGTTCATTCTCCTCATAAACAGCACAGCGGCCCGGGAGGAGATGCTCTAGCTGAGGAGGATGAGCCGGGAGACTGCGCCTTCCACGGGCTCTCGGTCAGGGACCGCAGGATTACTGGATGGGAAGAGAAAGATCAAATCGTTGCTGTGTTTGTGGTCACTTTCGACACAAGATCGGgGAACATGATAGAATGGTGCCTACCTCATGATGTCAACCTGGAAGGAGTAGAGTTCAAGTCTATGGCCAGCGGCTCCCATCGGATCTCAAGTGACTTCATATATTTCCGCAAAGGCTGTTACTTTGGACTAGCGTGCTTTGCTAACATGCCTGTGGAGAGTGAGCTGGAACGTGGAGCGAGGATGAAATCTGTCGGGATCTTGTCTCCTTCATACACATTGTTATACCGTTATATGCACTTCTTAGAAAACCAAGTCCGGCACCAGTTGCAGTGTCCAGGCCAATACTCTCCACTGGAGGCTTTTTATGAGGATAAAAAGGCAGTGTTGCCTTCGGGAGGAAATGGTTTGGTCACAGCTTGCCCAACCAGTGCTCTTGCACCCATAGTCAACCGCTGCATGCATCCAGAGATGAAGATCACACACCCGGCTGGCTGCATGTCCCAGTTCATCCGCTTCTTTGGAGAGCAGATTATGGTTCTTTGGAAGTTTGCTTTGCTCAGGAAACGCATCCTCATTTTCTCTCCTCCTCCCGTCGGTGTGGTCTGCTATCGGGTTTATTGTTGCTGCTGCCTTGCTAATGTGTCCATTCCTGGGATGGGTGTGTCTGTTCCGGAGTTTCGCCCCTTCTTCTACATCAATGTTGCTGACATCCCTGCTCTTGAGACTGAACTGTCTTATGTGGCCTGTACCACAGAGAAGATCTTTGAGGAAAAGAAGGAGCTGTATGATGTGTACATTGACAATCAGAACGTGAAGACGCACAGAGAGAGTCTCCAGCCTCTGCTTCGACTCAACAGTGCAGACAGAGAGaagtatcgcaagctctgtgagcAAAGGTACCAACATCTGAACCTCTTatgagaaagaaaaaacaataaaagtatgtATTTCCACAGGCATATGATCATATCAATGGGTTTCAGGCAGTTGCTGCTGTACTCTCAGGAGGTGGATGGAGATTGCACATCCAATGAGGAAGACCTCTTCATTCTGTTCTTCATGGAGCAGAACAACCGAATCTTCCAGACCCTGTCTGAGGTGGCGGTGAGTGCCGATCCAACCCTGACTGCTGAGCACGTGCGAGCCATGGGGCTGGATCCTCAAGGCGATCGCGGCTTCCTTGTGGACCTGCTGGAAATCTACGGCATCGACGTCATGCTGGTTATCGACAACCCCTGCTGCCCCCAGTGCTGTTTGGGGGAACTGATGTGATGTCCCCTATGGATATAAATCTGCTTGGACACCAGAGAATTGGAATAACGGTCCATCATTTCCTGGAtctacatgttttttttgtttgtttgctgggaACAACGGTTTAACGTCTGCTCTGAATGTCATATATTATGTATTTCTAAAAAGTTTGATGGTTGTTCATATTACACACTACTGTAACGGTGAGGATTTTCACAGTCTTCGCCACAACAATTCAATCATGTACATGTGAGAAGTCATTTCATTTGGGGAAGAACCTGGGCAAAGTCAAAAGTCAGTGTGTTATTTGTGATCTGTTGTGCATGGACTAATAGACACAAGTTTGGCTGCTGTAGTTTGACACGACATTTATTAATGTTCATGAATGGGAATGAACCACAATGTAGGAGGGTTTCAGTCATCCTTGTTTAACTCTTCAAATGTTAACTAATGAATGTGACTGACCTTTCAATGCTGTCTACACCTGTTCGAGATGTTTCtgttatattacacacacacacacacacacacacactgaacaggtATCACTGtactaaaaacaaattaaatggagCATAGAATGTGCATTTGTTTATCCCGGATAGGCCTATAATCATTGTCATCATTGGTATTGAAtgtaaattgtacatttaatgcTCCGGTTGATGCACACAgacgctgcattcatctttctgaAGAAATGAATGTGATTTCTGACTTTCTAATCGGTCAATGCTCATGGTTATTTTTTGTTGTGTATATATTTGGGTTtgtcatttaaatgtgtttgagtTGATCATTGCTGGATGACAGCAGAAAGACTGAGCTGATTGACAGTGGTTGTGTTTATATGTTCGTTCTATAAAGCCTAACTGGATGTTTAATAATTCATTGAGCTGcattaatagaatagaatatctAAATGGAAAAGGATTTACCCATTCATTTTACTGTCAGTTTCACTGTCCATCTAATTTTCAACATGCCAACAAATGTGACATTCGACTTTTGGAATTGAGTGCAGGCACTCAGGCTTGATGGAGAAAAGTTATTTAAAtcacctaaataaaatatttaaatgaataataaataatactattgcTTACAAACTAAA

Function

GO:

id name namespace
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-80 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be active in cytoplasm. Orthologous to human DENND11 (DENN domain containing 11).

Ensembl:

ensembl_id ENSDART00000077076

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027295 lncRNA downstream 221977 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA downstream 222055 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00027294 lncRNA downstream 392753 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027293 lncRNA downstream 657556 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00026441 lncRNA downstream 1085650 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00026461 lncRNA upstream 38074 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00026963 lncRNA upstream 604836 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA upstream 604836 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026498 lncRNA upstream 1372263 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 1384215 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00026454 mRNA downstream 9511 20516527 ~ 20532339 (-) True XLOC_013391
TCONS_00026453 mRNA downstream 75789 20459888 ~ 20466061 (-) True XLOC_013390
TCONS_00026450 mRNA downstream 83010 20435821 ~ 20458840 (-) False XLOC_013389
TCONS_00026451 mRNA downstream 83438 20436292 ~ 20458412 (-) False XLOC_013389
TCONS_00026452 mRNA downstream 97554 20441378 ~ 20444296 (-) True XLOC_013389
TCONS_00026458 mRNA upstream 21695 20581685 ~ 20608300 (-) False XLOC_013393
TCONS_00026459 mRNA upstream 23940 20583930 ~ 20608025 (-) False XLOC_013393
TCONS_00026462 mRNA upstream 38453 20598443 ~ 20608025 (-) True XLOC_013393
TCONS_00026463 mRNA upstream 53251 20613241 ~ 20636549 (-) True XLOC_013394
TCONS_00026465 mRNA upstream 82388 20642378 ~ 20674121 (-) True XLOC_013396
TCONS_00026448 other downstream 999619 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026444 other downstream 1086609 19455144 ~ 19455241 (-) True XLOC_013381
TCONS_00026443 other downstream 1086983 19454800 ~ 19454867 (-) True XLOC_013380
TCONS_00026442 other downstream 1087267 19454486 ~ 19454583 (-) True XLOC_013375
TCONS_00026440 other downstream 1088969 19452751 ~ 19452881 (-) True XLOC_013379
TCONS_00026460 other upstream 25100 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026464 other upstream 73799 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026468 other upstream 286200 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026472 other upstream 460921 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026485 other upstream 1152306 21712296 ~ 21720051 (-) True XLOC_013411

Expression Profile

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