RNA id: TCONS_00026458


Basic Information

Item Value
RNA id TCONS_00026458
length 4974
RNA type mRNA
GC content 0.41
exon number 7
gene id XLOC_013393
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20581685 ~ 20608300 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACACTTCGCCATCCTACAGTTGTATAGTTACTTAACTGTGAAAGAAACCGGGTGAGCACGTTTGTCACCCCGCTTTGAGAGAACAATTTGTCACTGGCGCAGAGGACTTGTGAACACTGTCATTTGGTCGTGCATGTCTCTGAGAACCTGACGTTTCTTTTCAATGGCTGCCTCTGGCTCCTCCACCACAGTGCCTGAAGGATTTCACTATGAGACCAAGTATGTCATCCTCAGCTACCTCAGCCTGCCCTCGCCATCAAGATCAAGACCCTCACATGCGGCTGAGGGAGAGAGCCATTCTACACAGGAAGTGGAAAGAGAGCGAAACAGCAGCCTGAAGAAACagattgaaaatgaaatgaagcaGCTGGAAGAGGAAATTGCAGCctCTTTTTCCAGGACTGGTTTTGATCAGCACACATCCCCAGTGTTCAGTCCAGCCAATCCAGAGAGCTCGATAGAGGACAGTCTGGCAGTATTGGGGGACCGCGTCTCTCGGGACCTGGACACACACCTGTTTTCCGCCACTAATACGCTTCTGAGCAGTGACTTGAACTTCGAATGCTTCAGAGCAGCAGTGGACGAGGTTTCCTCTCACGCTCAAGGAGGATGGAGCAAGGTGTTGGTACCTTTAGTATTGTTACAAGCCCTGCAGGCCAAGGGTCAATCGCTAGAAGCTCTGCTCCAGTGTGGTTTGCGTTACCTTGAAGAATCACAGGCAGACTTCATCATTCAGCAGGGAGGATGGGGCACAGTGTTCAGCCTGGATGAAGCGGAGGATCCTGGCGTGATCATAGCCGAGGACAGTAACGACATCTACATCCTGTCAGGTGAACAGGCCTCAGATCAGCTCAGCCCTCCTGCTTCACTGCTGACTCTCGGAGACAGTAGTGAACCAGCTTCCTGGCAGACGGAGAGTCTTCCTGTGTCTCTGACGGGACACGAGTCTTGGGCGCAGGTCAGCATGATGGACCCAGAAGACGTCAAGAGTCTGGACAGCGCTGAAGGAGTGGCGTTGGCTGAGGAGCAGAGCGAGAACAACTCCTCGAACTCTGACATAGTGCATGTGGAGCGTGAAGATGCTGAGCTGCTGGAAGAAGCTGGAGAGACGGTGGAGGAAGGAGAGCTGCAGAGTAGCGTACTCAGTGTTCTGGGCAGTGAGAGCGAACTCGCTGCTGTCCGAGAACAAGAGTCTGCTGCACCTGAGCTGCTTGCAGAACCAGTGGTGATGGAGATCCCTccccctccttctcctcctcctcctcctccttcagcATTGGCAGAGCAAGAGCTCCCGCCTGTCCATGCTGCTGTTACAGCCTCAATCCCTGTGCCTGAGCCTGAACTTCAGTCTCAGCCTGTTCCAGCTCCTGTGGAGCCACCTCCATCATCCCCACCTGAACCCGAAGCAACCCTGGAGCAAGAGATTCTTTCAGAGGTTGAGCTGAAGACCTCCTCCCGATCTCCAGACCTCCCAATCCCAAGTCCTGCGGAGGTGCAGACCACGTCAGTGCCACAAGCCGAGTCCGCCGAGCTCCCCGTGCTGCTATATGGCGGTGCTGCCCTGGTGGCCGTCGCTGCAGTGTTGGCCTTCGGAGCTCTAGCCTACAGGAAGAAGTAGAAAGTCCTTGACTGTCCATGACCTCGCTGTATCTCTTGCCCTGTGGTTAACGTGCTGCCACAAGCTGCACTTTATGGGAAAATAAGTACTCCTCTTATTTGTGTCATACTAGTTTGTTTTCCGTTCTCATTGCTTTTATTCTTAGGCGTAGTTCTGGAAACCAGCTTTATGGCTGGACGGGAACTTGCAGGTGCAGATTCAGGTTTCTTTCATGCTGTATTTGTGAACATTGGAGTGACCCGTTTCATGGGCTGCGACTGAGGTTTTGCCTGGATCCTTAATATTAACTAAAGAAACATCAAGGCTTctgaattataaaaaaacaaagggatagatcacccaaaacacAAAATGAGCTGTTAGTTTATTCACCTGCAGGACATTCAGGTTATAGctgattttttttgttctttagtTGATCATTAGAGAAAGTTTTTAGCAGAAACTAGTTCTTGGTTCTTCATAATACACAAGTCAATGCTACTAGCACTTTAGCAGTCTAAAAAACATGACATTCACtggcaaaataaaattaatacttgcagctcctgatgatacattgaggTATTATGAAGCAAAACAATCTATCTTTGCAAAATACCTTTAATCCACAGGCTCAGCAGACAGGTCCATTCACAATATATGATATTGTACAAGCTCATGTGACTCATGAACACTCAGATCTGTCTGCTGACGATTAAAGTAATCGTAGTGAAATAATATTCCATTTCTCACACAGAACAATCATGACGTTTGTTATTTGTtcatactatttatttaaaaaataaaaacattttttggggacaacttaattttttaagttcaatcgacttacatttgtaaaaactaataagctaacttaattcctttgttTTCTCAACACAAATAGAATGTGTGGAACCCAAGATTTTGTTTACAGTCTTTATCTTCAGAAGCCACTGGTATTCATTTGTTTTGCCTGAATATGcttggttttttttttgtcttaaagtGTTGTAGCTGCTGCATATTATCAATCACCACgaacagtttcagctcaaaatcgaTTTCAGTATTCTGTATTGTAacctgagggtgaataaattctatttgttttatgtttgggGAACTATCTCTTATGTTTTTTATGAGTGAACTGTATGTAatttgatttaatgaaatattgtttGGTTTTACACTAGTTTGGGTTTGTGCataattgattatttaaaaaaataataattaattaacatagtttttattttacattcttatgTGATACAAGAGATGTTTTAGCACAATGCTTTCTTGGTGTGTGACACAATCCTCTTACTCCACCCTTTTATCCAacagtcaatcacattacatcaTTAGTTAGACGGCCACTCAATAATTAaatctcattttcatttcaatatactgtaattaaCCACACAAGAAATATTTTCCTTCACCTTTAAAAACTCTCTCTATTGCACTGGAAAAATAACATATTCACCATCATCAGTCACTTGAAGAGTTTAGTTGCGAAaccctctaaatgccatctgaaaattttccctaaaattagcatttttatcaggctcatttgtgtatgttcagtaatgtcacttttatggtaaagatttctcaacataaacaaaggaggctgcgaaaaaggttttattttcgatggaaatttcagacggcacttcaaggtttttgcatctaagcTCTTCGCTCATTCGTATCTACGTCAGTGCAATGCATAgatgtatatatatctatgagtGCAATGAAATTTCGACActccaaaacattaaaaacacattttcatctCATTAGTTGTATCATTAGATACTCAAAATCCATGATTTACAATATTATAGCTAAAAACCATTTAGCCAAAAACACAGAAAGGTCCAATTCCTCATTCATTCCTCCTGGTGTGAGTGATTTTAATTTCTGAATCCAGAACGCTTCTCTAGTTGTTTAAAGTCAGGTCTGTTTTGTATCAcctaagaatgtaaaataaaaactatacaaagtaattatttaatgagtgcGATAACCTTCTGAATAATATTATTGACAAGATTACACAccgaaaaaatgaaaaaagaaaaaaaaactgcgagtgagcagtgaaatttaatttctgaatattttaccTCAGAAACTAAATATTGAGGTGCAGAACTTTACAGGCCAGAATCAGATGGATTGCATAAGTGATATTCATCTTACTAAATCAGTATTTCTACAGTCAAAATTAAAGTCTCAACGCAATATTAATTGCTTAATAAACCGTCTGTTATTCATATTaacaatatttactgtaaaaatagaaCAAGTTGCTTATATGAATGCTTTTGTTTGAATTCCCCTTTTTAAAAAGACTAAAAAGGAAGCCTGGGTCACAGCCTGTCGGAAAACCCCATCTCTATTAATATGTTCAAGGGATTGTCGATGCTAATTGTACAGAAATCTGCTATAATGTGAACATTTATCCTGTTGAGGttgaaaaactttttattttttagcattcTTGTAAAGAAATCAATATTACACCAGCACAATCAACAGAGCACATGACCGAATTTATCTCGGCATCAGGAATCAGAACATCACACTAGACAGGAGAAAGTCATATTTAGTTTTCTAATATGATATTTCTAAGCGAGCGTTTTCTAATTCTGGGTCGATAGTCGTTTCAATAAAGTGACAATATTATAAAACATGAAATGGTTGGGTTTTAAACCTGCACGTTTTCCGGAACAACCGAATGGGTTTTGTAATTTTTAGAATAGAAAATGATTTGCTGTGTTAGAAAATATGAATCTGTCTTTTCCAATCAAGTGCTGACTTCAGGTTTGGGGGACCAGAATGTCTCTTCAATGTCTTCTGAGCTACAGATGAGTCATTTAGTTCTCTTTGTCCCCTAACATAAAGTATTGTCGATCTTCAGCCTCTTACCATGTGCTGTTGTTTGTCTCTGTACAGCACAGCCTTGCCACTCTGCTTTCCCCTGTTGTGTgcctatccaaaaaaaaaaaaacaggcagaaGCAGAAGTCACGTCTACAGGCAGGAGACACCTGTGTTGTCAGTGGTTTGCAATCTCACGGCAAAGTGATTTTGTATCAATAGATGGACAAAAGCTGTGAATTAAAACTTTATTCCATCAAGAGTGAAACTGTTGATTTGTGTTTTGATTTAGGTCTGAGTTTTTATGATTAGTTTCTGCTTTTATTAAACTTACAGTGCCGCTTCCTCTTTTAGTATTGATATGACTCATTTGTTTTTGTAAGAGATGAGATGGTTAACCATATGACGCCTTTAATAGCCTCAGTTTTGGTTTGACTTTTGGttcaataaacacacaaataagaAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0006915 apoptotic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko04137 Mitophagy - animal
ko05134 Legionellosis

ZFIN:

id description
ZDB-GENE-050419-215 Predicted to act upstream of or within apoptotic process and regulation of apoptotic process. Predicted to be located in membrane. Predicted to be active in mitochondrion. Predicted to be integral component of membrane. Orthologous to human BCL2L13 (BCL2 like 13).

Ensembl:

ensembl_id ENSDART00000140632

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027295 lncRNA downstream 261812 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA downstream 261890 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00027294 lncRNA downstream 432588 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027293 lncRNA downstream 697391 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00026441 lncRNA downstream 1125485 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00026963 lncRNA upstream 556526 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA upstream 556526 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026498 lncRNA upstream 1323953 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 1335905 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00027296 lncRNA upstream 1942295 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00026457 mRNA downstream 21626 20543177 ~ 20560059 (-) True XLOC_013392
TCONS_00026455 mRNA downstream 21678 20541316 ~ 20560007 (-) False XLOC_013392
TCONS_00026454 mRNA downstream 49346 20516527 ~ 20532339 (-) True XLOC_013391
TCONS_00026453 mRNA downstream 115624 20459888 ~ 20466061 (-) True XLOC_013390
TCONS_00026450 mRNA downstream 122845 20435821 ~ 20458840 (-) False XLOC_013389
TCONS_00026463 mRNA upstream 4941 20613241 ~ 20636549 (-) True XLOC_013394
TCONS_00026465 mRNA upstream 34078 20642378 ~ 20674121 (-) True XLOC_013396
TCONS_00026466 mRNA upstream 117849 20726149 ~ 20822045 (-) False XLOC_013397
TCONS_00026467 mRNA upstream 121753 20730053 ~ 20816103 (-) True XLOC_013397
TCONS_00026469 mRNA upstream 251361 20859661 ~ 20869175 (-) True XLOC_013399
TCONS_00026456 other downstream 21695 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026448 other downstream 1039454 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026444 other downstream 1126444 19455144 ~ 19455241 (-) True XLOC_013381
TCONS_00026443 other downstream 1126818 19454800 ~ 19454867 (-) True XLOC_013380
TCONS_00026442 other downstream 1127102 19454486 ~ 19454583 (-) True XLOC_013375
TCONS_00026464 other upstream 25489 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026468 other upstream 237890 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026472 other upstream 412611 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026485 other upstream 1103996 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026501 other upstream 1475472 22083772 ~ 22083886 (-) True XLOC_013417

Expression Profile

//