RNA id: TU17578


Basic Information

Item Value
RNA id TU17578
length 333
lncRNA type intronic
GC content 0.40
exon number 1
gene id G14932
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16185217 ~ 16185549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaaatggtttcactgTCCAGATCCGTTACACCAGAGACACAATGCATCCCTGACTACCTCCGGAGGTAGTTAGGAAGATCTGATCATAATCAGATCACCATCCATATTTTAATTatctacacctgtctaaaaatgtgggcacaatcagaacgTGGACAAAATCAGGATAAAGGACGCATGTTAGAACCAGGCATAAACAGGGCTTTAGAGACCTGAGCATTGTGATTAATAACCAACACAATCCTGATCTCCATGCCATTGGCTGCTTTATTGATTTTGTTGCGTTGTATTCTATTTGGTTCTAGATTATTCTACCCAGAGATATGAGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17543 lncRNA upstream 60466 16114813 ~ 16124751 (+) True G14897
TU17532 lncRNA upstream 87649 16087969 ~ 16097568 (+) True G14888
TU17497 lncRNA upstream 141142 16043382 ~ 16044075 (+) True G14858
TU17030 lncRNA upstream 547171 15637580 ~ 15638046 (+) True G14427
TU17020 lncRNA upstream 569380 15615571 ~ 15615837 (+) True G14418
TU17655 lncRNA downstream 123318 16308867 ~ 16326251 (+) True G15008
TU17974 lncRNA downstream 174952 16360501 ~ 16360854 (+) True G15304
TU17996 lncRNA downstream 188773 16374322 ~ 16374783 (+) True G15326
TU18012 lncRNA downstream 199042 16384591 ~ 16385103 (+) True G15342
TU18015 lncRNA downstream 202147 16387696 ~ 16387938 (+) True G15345
XM_036952860.1 mRNA upstream 4235 16157937 ~ 16180982 (+) False LOC110491417
XM_036952900.1 mRNA upstream 4235 16157937 ~ 16180982 (+) False LOC110491417
XM_036952929.1 mRNA upstream 4235 16168382 ~ 16180982 (+) True LOC110491417
XM_036952967.1 mRNA upstream 8536 16157932 ~ 16176681 (+) False LOC110491417
XM_021564067.2 mRNA upstream 209361 15922503 ~ 15975856 (+) True LOC110490588
XM_036953308.1 mRNA downstream 294431 16479980 ~ 16488940 (+) False LOC110491555
XM_021565131.2 mRNA downstream 299925 16485474 ~ 16488940 (+) True LOC110491555
XM_036953427.1 mRNA downstream 369943 16555492 ~ 16562184 (+) True LOC118941197
XM_036953512.1 mRNA downstream 393407 16578956 ~ 16592967 (+) False LOC118941201
XR_005037575.1 mRNA downstream 427051 16612600 ~ 16624198 (+) True LOC118941290
TU17062 other upstream 469535 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 717229 15459904 ~ 15467988 (+) True sass6
TU16116 other upstream 1223214 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 1372593 14811771 ~ 14812624 (+) True G13434
TU15850 other upstream 1484487 14700176 ~ 14700730 (+) True G13391
TU18087 other downstream 393537 16579086 ~ 16580882 (+) True LOC118941201
TU18393 other downstream 730950 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 777508 16963057 ~ 16967790 (+) True LOC110492876
TU19135 other downstream 1468658 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 1790415 17975964 ~ 17991176 (+) True ccdc124

Expression Profile