RNA id: TCONS_00026461


Basic Information

Item Value
RNA id TCONS_00026461
length 828
lncRNA type retained_intron
GC content 0.47
exon number 6
gene id XLOC_013393
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20581685 ~ 20608300 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTCACCCCGCTTTGAGAGAACAATTTGTCACTGGCGCAGAGGACTTGTGAACACTGTCATTTGGTCGTGCATGTCTCTGAGAACCTGACGTTTCTTTTCAATGGCTGCCTCTGGCTCCTCCACCACAGTGCCTGAAGGATTTCACTATGAGACCAAGTATGTCATCCTCAGCTACCTCAGCCTGCCCTCGCCATCAAGATCAAGACCCTCACATGCGGCTGAGGGAGAGAGCCATTCTACACAGGAAGTGGAAAGAGAGCGAAACAGCAGCCTGAAGAAACagattgaaaatgaaatgaagcaGCTGGAAGAGGAAATTGCAGCctCTTTTTCCAGGACTGGTTTTGATCAGCACACATCCCCAGTGTTCAGTCCAGCCAATCCAGAGAGCTCGATAGAGGACAGTCTGGCAGTATTGGGGGACCGCGTCTCTCGGGACCTGGACACACACCTGTTTTCCGCCACTAATACGCTTCTGAGCAGTGACTTGAACTTCGAATGCTTCAGAGCAGCAGTGGACGAGGTTTCCTCTCACGCTCAAGGAGGATGGAGCAAGGTGTTGGTACCTTTAGTATTGTTACAAGCCCTGCAGGCCAAGGGTCAATCGCTAGAAGCTCTGCTCCAGTGTGGTTTGCGTTACCTTGAAGAATCACAGGCAGACTTCATCATTCAGCAGGGAGGATGGGTAACTGACTAATACAGTTTAGAGACTAAATAATTAGCCCTGTGATATTTGAAGTCAAATATTTCCTTAGTGATGTTTAACAGCCATATTTCCTactatatttttcttctgaagaaagttttatattttttagtttgcctg

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0006915 apoptotic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko04137 Mitophagy - animal
ko05134 Legionellosis

ZFIN:

id description
ZDB-GENE-050419-215 Predicted to act upstream of or within apoptotic process and regulation of apoptotic process. Predicted to be located in membrane. Predicted to be active in mitochondrion. Predicted to be integral component of membrane. Orthologous to human BCL2L13 (BCL2 like 13).

Ensembl:

ensembl_id ENSDART00000151864

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027295 lncRNA downstream 278191 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA downstream 278269 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00027294 lncRNA downstream 448967 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027293 lncRNA downstream 713770 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00026441 lncRNA downstream 1141864 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00026963 lncRNA upstream 556589 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA upstream 556589 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026498 lncRNA upstream 1324016 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 1335968 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00027296 lncRNA upstream 1942358 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00026457 mRNA downstream 38005 20543177 ~ 20560059 (-) True XLOC_013392
TCONS_00026455 mRNA downstream 38057 20541316 ~ 20560007 (-) False XLOC_013392
TCONS_00026454 mRNA downstream 65725 20516527 ~ 20532339 (-) True XLOC_013391
TCONS_00026453 mRNA downstream 132003 20459888 ~ 20466061 (-) True XLOC_013390
TCONS_00026450 mRNA downstream 139224 20435821 ~ 20458840 (-) False XLOC_013389
TCONS_00026463 mRNA upstream 5004 20613241 ~ 20636549 (-) True XLOC_013394
TCONS_00026465 mRNA upstream 34141 20642378 ~ 20674121 (-) True XLOC_013396
TCONS_00026466 mRNA upstream 117912 20726149 ~ 20822045 (-) False XLOC_013397
TCONS_00026467 mRNA upstream 121816 20730053 ~ 20816103 (-) True XLOC_013397
TCONS_00026469 mRNA upstream 251424 20859661 ~ 20869175 (-) True XLOC_013399
TCONS_00026460 other downstream 3822 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026456 other downstream 38074 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026448 other downstream 1055833 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026444 other downstream 1142823 19455144 ~ 19455241 (-) True XLOC_013381
TCONS_00026443 other downstream 1143197 19454800 ~ 19454867 (-) True XLOC_013380
TCONS_00026464 other upstream 25552 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026468 other upstream 237953 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026472 other upstream 412674 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026485 other upstream 1104059 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026501 other upstream 1475535 22083772 ~ 22083886 (-) True XLOC_013417

Expression Profile

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