RNA id: TCONS_00026466


Basic Information

Item Value
RNA id TCONS_00026466
length 5125
RNA type mRNA
GC content 0.54
exon number 23
gene id XLOC_013397
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20726149 ~ 20822045 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGACATCTTGAGCCTACATGTTCAAAAATTCAGGGCACTGAAAAACAAGCTCCATTCATCTCCATCTTATAGGGAACCTTTAAATACAAACTCGACTGGCGACAGAGAGGTTAACCCAAGCACTACAAAAATAGGAGCGCGTTCGTGTCACTCCCTCAAGGCTGTTGTTGGTTCACACCTCCTCTTTTCAGGTTTACATCTGGACTGAGCTTCACAACCTGCTCCCGTCAAAATCTAGTCCAACGTGCGTCCACAGCCCTGCTCAACGCATTTACCGGCGAAAGATGAGTACTCGGCTTTTTGCAATAGTCCTGCAGCAGTGTAATAGTTAAAATGAGTGGCGAATGCGTTATTTGATGTGTGTGTGGAGCCTGAGCCTGAGCAGTCCTCTACAGTGAGAAGATGGCGTCGGACGGAGCGAAAGGGGAGCAGCCGCCTCCGCTACAAACACTAGTAACCACTGGCCATGGAAGCGTCGAGGCGAAATGCGAGCTGAACATCGACAACCTGAGCAAACCAGAGCTTCTGACCCTTCTGAGCATCATGGAGGGAGAACTTGAGGCCAGAGACCTGGTCATTGAAGCTCTTAGGGCTCGAAGAAAAGAAGTGTTCCTGCAGGAGCGATATGGACAGTTCAGTCTGACAGACCCATTCCTCGCCATGCAGAGGGACTTTGAGTCAGGGATGGGCCCAAAGGATCGTAGGCCAGTCAGCGCAAGCCCCATCACTGTGCTGGAAGCTGTTATGGCCCACTGCCGTAAGATGCAGGAGAAGATGTCTGCCCAACTCTCGGCTGCTGAGACCAGACAGAAGAGGCTTGAAATGGAGAAACTGCAGCTGCAGAGCCTGGAGCAGGAACACAGGAAGCTGTCAGCTCAGCTGAAGGATGAGCGAGAGAAAAACAAACACGTGGTGATGTCACTGGTGCATGAATGCAAGCAGCTAGCTGCTCGTGTGGTCGAAGAGAACCAGCGCTTTGAGGAACTTTCGTCCCGTACTGAGCAGGATGGTCGATCGGTGGGACGTCTGGAAGAAGAACTGGCATCTGAACGACGTCGTAGCCAACAGATGGAAGCGGAGATGGAGAAACAGTTGGCTGAATTTGACACAGAGCGAGAGCAGCTACGTGCCAGGCTTAGCCGCGAGGAGACTCGTGCTGTGGAACTCCGGGCTGAAAGTGAGAATCTCCGCTTGCAGGTGGAGCAGCTAAGAACTGAAAGATGCAAAGATTCCCCACCACTGCCTTCTGTTACCCCAGCATCTGTCTCTGTTAAACCCAAGGCTATGGTGTCTGTGGCTGTGGGCACTGAAGCAACTGTTTGCAAGACTGTCTCTTCTCAGACAGATGCACCGCTGGAAAATGAAGGAGCTAAGAAAGTGCCACTTTCCATCCCTGTCAAGCCTAGTGGCTCCACCTATGCTAGCATGAACCTACCTAAGACCTCCAGTGCAGGACGGGGGCTACACCATGGGAGCTCACAGGCAGAAAATGGAGGGGACGGTCAAACACATCTACATAGCTCACATTCACCTGGTGTATCTTCTACCTTGCCGACTGGGGTTAGTCCCCGCGTCCAGGCAGCCCGTTACAAATTCCAACCCTCTGCCTCAGAGCAGGACCAAAATGGAACCGCAAACCAGAGCCCCCCCTCGCGTGACCTGTCCCCCACAAATCGAGACAACTTTGCAGCTAAACAACAGGCTCGACACACTGTCACACAGGTTCTGTCCCGCTTCACAAGCCCTCCAGCAGGGGGACCCCCTGCAGCCCTTCGGCCCGGTCTGCCACATTCTACATCTGAGGGAGGACCCTTCACAGGACGTTTAGGCCACCCCCAGATAGGCCTTAAATCACCAACTGTGGCCCGAATCGACAGGGGTAACCCACCCCCGATCCCACCAAAAAAACCTGGACTGTCCCAGACACCATCCCCTCCACACCCACCAATTAAAGTAGTAGGTGAAGCTAGCAGGTCCCCAGGAACAGGACTTGGGGTGGGTCTTGCCAAATCAGCTACCACCCCTCAGCTTCCACCAAAACCCTCCTTAGATATGGGTGGTACAGTCCCAGCCATGACTGCGTCACAGGTGGGTGCATCCTGTTCTGGCTGGCCATGGGGGCAGCAGCCAACAGCAGCATGTGTGGAGTGTCCCCCTGTCATCACCTCCTCCACAGCTACCATTGTCAGTAGCCCCTCCATAAACCCATCTAGTCTTCCATCCCATAGCCCCCAGCACCTGGGCAGTCCCCTGGCAGCAGCATCAGGCTGGTGTCCCTCCATAGTCCCCTCGCTAACCTGTGGTGACCCCGTCCCCCTGGATGACGGGCAAACCCTTCTCCTCCAAGCTGCTTCCCAGGGAAATGTCACTTTATTGTCTATGCTGCTTAACCAAGATCCACTATTGGATATTCATCACCATCAACATGAATTAACCTCTGCCTTGATCTCTGCTGCTCATAATGGACACACAGACTGCTTAAATCTGCTGCTGACTTCAGGAGCATCTGCTGATGCTGCCGATGAAACAGGATTTTCGCCGTTACATGCCGCCAtgcaaaatggccaccatggGTGTGCGAGAGCTCTGGTGAACTGTGGTGCTGATTTGGAGAAGGAGTATTCACAGGGAAGGACCCCGCTGTACCTGGCCTGTGAACAGGGACATGTGCAGTGTGTGAAAGTGTTGTTAGACGCAGGAGCAGACCGAACACACGTTACCACTGACAGCTGCACAGCTCTGCACGCTGCAGTCAGTTCAGGTCATGTGGACACTCTGAAGCTCCTGCTGCACCACCCGTCATCTGAACCAGACCATCTGAACAGCCCAACGTTTCCTTCAGACGCCAAACAGGAGCTCCAAAAGCCTGGCATAAGCAAGGCATGTCACATCCTCAACCACAGTAACCAGGATGGCTGGACTGCCGCCCACATTGCTGCATCCAGGGGCTACAAGAAATGCCTGGAGGTTTTGTGTAACCACAGTCAACACGACATGGAGAGGAGGGACAAATGCAATCGCACCATACATGATGTTGCCACAGACGACTGCAAAGACCTTCTAGAGAACCTGGACTGGTACACAGTGGTTGTACAGGTGCTCATGGGCTCGCCGGAGCGTCTTTGTCCTGTGGATCTCCTGGAAGACGGCTGCACTGTTGGCAAAGTTACAGTTCAGCGCCACACAAGCTGGGAGGAGTTAACAGAAAGCCTGAGTCACCTGCTGACCAATCATCTCCAGCTGATTTGTGGGAGCTGGGAACTGCAAGACGTTCTGGCCAGAGCTGACACTTTGGGCCTTTCTGCCAACAGCATAGCCTCCGTGATTATAGGTGATGCTGTCTGGATGGCGGGGCAGGATCTGGCTCAGTCTCCGTGGGATCTCGTTCGCAAGCGGCTGAGTCAACGGATCACTATACGCCTTAAAGGCCTGTCAGAGTGTGCTCTGGATGAGATGACGTACGACTCCCTGATCTCCGTTCAGCTGCTGCAGAACTACGTCCGCCTGGTGGAACAGTACCATAATGTTATTTTCCATGGGCTGGAGGGAAGCTTTCAGGAGTACATCGCCAACCAGATATCTCATTATATCAAGCACAGACAAGAGGCTCAGGGGATCATCTGCGATGTCATCAGGGTGGAGATAGAGGAGAACCTATCAAAAGAGCAGCTGCTGGAGATCTTCATCAATTGTGGGTTCCTGGTGTCTCTGCATGAAAGCAGCGCTGGTCATTGTGTTGTGGTGGTTCTGGAGGGTCTGGAAAGAGCCCACTCGCTTAGCCACATCCTGGGAGATCTGTGTGAAGCCCTGGAGAACCGAGGATCTGTCTATTCTCTCTCCCTGAACCATGGTCATGATGGGCTGTACTATTTCCGGGAAGGGAGTTTTTTAATGGGAACTCTGGCCAAGCCTCGTCTGCAGGGTGCTGAGCTGCGATTACAGCAGCACTTCCGCTGGGTTCAGCTGCGATGGGACAGCGAGCCCCTCAATGGCATGCTGGGACGGCATATGCGCAGAAAGTTGCTCCACAAGACTCAGGGCCAGTGCTGGACGTCTGATGATCCTCTACAGAAAGCTCTTTCTTGGGTTTGCTCAGTGTGGCACCAGCTCAATGCCTGTCTTTCACGTCTGGGGACCTCAGAGGCCTTGCTGGGACCCTACATCTTCCTCTCTTGCCCTGTGAATCTGGAACAGACCCAGGCCATACCCAAGTGGTTGGTGAGGCTTTGGAATGCAGTGATTGTTCCACGAGTCGAGGACGCTGTTATATCGAGAGTAACAGCCAAACGCTCTCCCTCGCAGCGACGGTCCCCCAACAGCAAAGCTCTGACCCCGGGCCAGAGAGCAGTGGTCAAAGCTGCTCTCAATATCCTGCTCAATAAAGCTGTTCTGCAAGGTTGCCCACTGCCCAGACCAGAGATAGACAGGCTCTTGCCAGAGCTCCAGGGAGGATGCTTTCCTCTTTCCGCTATTGGCTCCGCCTATAGGAAAGGTGGAAGAAAAGGTGCTTGGAGACGAGCCAATACCAGTCCACGAAAAAAAGGAAGCCCCGCCTCTGGGAGGAGCTCCAGCTGCTCTTTTAGAGAAGGATCTCTAGCCAATTCTAGCACTCAGTCGATGACAAACGGCAATCATGCGAGTGGTTTGTCTCTCTGCTCTGATGATGAGACGGATCTCATTCGAGAACTCCAGAGCATGTGCTCTAGCAAATCAGAGCCAGACATAAGCAAGatTGCTCTGTTCAAAGAGGACTTCATCATGCTTCCACACTCGAGTTCGGCTTCTCCTCAGGGGACTGATGGCGAGGTCAACCAGCCCCAAACACACTCGCATACAGCAGACAGAGCTGTGGATAACACGCGTCCTCCAGCACAGCAGACTGACAGTGTTCACACTTCTCCTCGGCGAGTGATGAGGCCCAGGTCCCATCTACCTGTCCCGAGCAGCAGAGGATCTCAGCAGATGATCAGCAGCAGCTCTTCCCTTCAGACTCACAGCAGAGCCTCCACCAGCAGCAGCAGAACAAGGCAGCCCCCGtccaacaacaacacaaacaacCTCTCACAAGACCACATCTGGTTCCTGGACCCCAACTCTAATGAAAACTACAGTACCCACGGATAG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8134 Predicted to be located in cell cortex and dendritic spine. Is expressed in anterior macula. Orthologous to human CTTNBP2 (cortactin binding protein 2).

Ensembl:

ensembl_id ENSDART00000100743

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026461 lncRNA downstream 117912 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00027295 lncRNA downstream 406276 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA downstream 406354 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00027294 lncRNA downstream 577052 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027293 lncRNA downstream 841855 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00026963 lncRNA upstream 342781 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA upstream 342781 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026498 lncRNA upstream 1110208 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 1122160 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00027296 lncRNA upstream 1728550 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00026465 mRNA downstream 52028 20642378 ~ 20674121 (-) True XLOC_013396
TCONS_00026463 mRNA downstream 89600 20613241 ~ 20636549 (-) True XLOC_013394
TCONS_00026458 mRNA downstream 117849 20581685 ~ 20608300 (-) False XLOC_013393
TCONS_00026459 mRNA downstream 118124 20583930 ~ 20608025 (-) False XLOC_013393
TCONS_00026462 mRNA downstream 118124 20598443 ~ 20608025 (-) True XLOC_013393
TCONS_00026469 mRNA upstream 37616 20859661 ~ 20869175 (-) True XLOC_013399
TCONS_00026470 mRNA upstream 59417 20881462 ~ 21047580 (-) False XLOC_013400
TCONS_00026471 mRNA upstream 60688 20882733 ~ 21047007 (-) False XLOC_013400
TCONS_00026473 mRNA upstream 255483 21077528 ~ 21097663 (-) True XLOC_013401
TCONS_00026474 mRNA upstream 279790 21101835 ~ 21105968 (-) True XLOC_013402
TCONS_00026464 other downstream 92226 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026460 other downstream 131907 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026456 other downstream 166159 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026448 other downstream 1183918 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026444 other downstream 1270908 19455144 ~ 19455241 (-) True XLOC_013381
TCONS_00026468 other upstream 24145 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026472 other upstream 198866 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026485 other upstream 890251 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026501 other upstream 1261727 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026504 other upstream 1728550 22550595 ~ 22552256 (-) False XLOC_013420

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_03744519_03787129.mRNA True 5887 mRNA 0.51 24 CI01000013 3744519 ~ 3788177 (+)