RNA id: TU19213


Basic Information

Item Value
RNA id TU19213
length 378
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G16372
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17620495 ~ 17620872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtGACTTCAAAccaggttcagaatgtccactcagtgggcctacacattgcacatcCTTTACTTTGTCCATTTTTATCTCACACGTTTTTACATTAATTTTTCTAAATGTAAGATTTCAATAGCTCCTTAGTCATGTGACCTAATGTCcgctgactacccttctatattgcacactcttgtttgtgtactgtaaaaTCATGCGGTGTAATGTACATTTTTCATAGTTTCAAATttgcaatagctccttggtcatgtcaatTACACACCTAAGAAGCATGCAGTGGATATACACCCATATTGCATAACCTCTAGTCATGTATCTTCTATATTGTTGTACATTAATATTAGTTTGACAATTAGGGGGTTCAGTCTAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19209 lncRNA upstream 3926 17616337 ~ 17616569 (+) True G16368
TU19206 lncRNA upstream 7891 17612264 ~ 17612604 (+) True G16365
TU19117 lncRNA upstream 115576 17484278 ~ 17504919 (+) True G16294
TU19101 lncRNA upstream 153842 17466182 ~ 17466653 (+) True G16281
TU19069 lncRNA upstream 178984 17441177 ~ 17441511 (+) True G16259
TU19133 lncRNA downstream 42886 17663758 ~ 17672718 (+) True LOC110495874
TU19259 lncRNA downstream 64469 17685341 ~ 17685594 (+) True G16391
TU19149 lncRNA downstream 118903 17739775 ~ 17740617 (+) True G16315
TU19151 lncRNA downstream 119838 17740710 ~ 17743591 (+) True G16317
TU19270 lncRNA downstream 128268 17749140 ~ 17749431 (+) True G16401
XM_021570564.2 mRNA upstream 18843 17596509 ~ 17601652 (+) False LOC110495326
XM_021570637.2 mRNA upstream 18843 17596509 ~ 17601652 (+) True LOC110495326
XM_021570752.2 mRNA upstream 24114 17591274 ~ 17596381 (+) True ctdspl3
XM_036956952.1 mRNA upstream 29487 17526803 ~ 17591008 (+) False LOC110495217
XM_036957379.1 mRNA downstream 7795 17628667 ~ 17637664 (+) False ndufs7
XM_036957504.1 mRNA downstream 7795 17628667 ~ 17637664 (+) False ndufs7
XM_036957446.1 mRNA downstream 7859 17628731 ~ 17637664 (+) False ndufs7
XM_036957567.1 mRNA downstream 7862 17628734 ~ 17637664 (+) True ndufs7
XM_036957708.1 mRNA downstream 33292 17654164 ~ 17672250 (+) False LOC110495874
TU18429 other upstream 652705 16963057 ~ 16967790 (+) True LOC110492876
TU18393 other upstream 700086 16916499 ~ 16920409 (+) True LOC110492606
TU18087 other upstream 1039613 16579086 ~ 16580882 (+) True LOC118941201
TU17062 other upstream 1904813 15695041 ~ 15715682 (+) True LOC110490510
TU16507 other upstream 2152507 15459904 ~ 15467988 (+) True sass6
TU19135 other downstream 33335 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 355092 17975964 ~ 17991176 (+) True ccdc124
TU20408 other downstream 1261851 18882723 ~ 18956208 (+) True G17420
TU21562 other downstream 1943977 19564849 ~ 19565221 (+) True G18481
TU21568 other downstream 1947913 19568785 ~ 19575028 (+) True LOC110502506

Expression Profile