RNA id: TCONS_00026472


Basic Information

Item Value
RNA id TCONS_00026472
length 578
RNA type processed_transcript
GC content 0.49
exon number 2
gene id XLOC_013400
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20881462 ~ 21047580 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTACATTCTCCTGTTCCGTGTCTCCGGTCTGGACAGCCTGAGTGTGCTCTTCCCTAACCTCAACGTCATCCGAGGACGCAATCTATTCTACAACTACGCCCTGGTCATCTTCGAAATGACCAGCCTGAAAGATATCGGTCTGTATAACCTGAGGAACATCACCAGAGGGGCCATCCGAATCGAAAAGAACCCAGAGCTGTGCTACTTGGATTCGGTTGACTGGTCACTCCTTATGGATGCAGAGTTTAACAACTACATCGCTGGAAACAAGCAGTCCAAAGAATGCGGAGATGTTTGTCCAGGCATCAATGAGGATAGACCGCATTGCATAAGGACCAGTTTCAATGACAACTACAGTTATCGCTGCTGGACCTCTAACCACTGCCAGAAAGAATGGTGGGAAAAGCATAATGGATGAGAACACTACAGCGCTCTCCCACCCCTGGCCTTCAAGAGACCTACAGACCGTGCAAGTCTCAGGCTCGCAGAGATGCCTTTCCCTCTGCCTGaaaacaaacagaggaaatcagcCCTCCTCAAAGACATACTTCTTTACAGCTGTAgtgtttgttgttg

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0048752 semicircular canal morphogenesis biological_process
GO:0007507 heart development biological_process
GO:0033674 positive regulation of kinase activity biological_process
GO:0043009 chordate embryonic development biological_process
GO:0043010 camera-type eye development biological_process
GO:0046328 regulation of JNK cascade biological_process
GO:0007275 multicellular organism development biological_process
GO:0043410 positive regulation of MAPK cascade biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048009 insulin-like growth factor receptor signaling pathway biological_process
GO:0031101 fin regeneration biological_process
GO:0042593 glucose homeostasis biological_process
GO:0003007 heart morphogenesis biological_process
GO:0051897 positive regulation of protein kinase B signaling biological_process
GO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0030424 axon cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005899 insulin receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043560 insulin receptor substrate binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005520 insulin-like growth factor binding molecular_function
GO:0043027 cysteine-type endopeptidase inhibitor activity involved in apoptotic process molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0005009 insulin-activated receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020503-1 Enables cysteine-type endopeptidase inhibitor activity involved in apoptotic process and insulin-like growth factor binding activity. Acts upstream of or within several processes, including animal organ development; fin regeneration; and insulin-like growth factor receptor signaling pathway. Predicted to be integral component of membrane. Predicted to be part of insulin receptor complex. Predicted to be active in axon. Predicted to be integral component of plasma membrane. Is expressed in several structures, including digestive system; eye; gill; musculature system; and reproductive system. Human ortholog(s) of this gene implicated in several diseases, including dementia (multiple); kidney cancer (multiple); liver disease (multiple); nervous system cancer (multiple); and neurodegenerative disease (multiple). Orthologous to human IGF1R (insulin like growth factor 1 receptor).

Ensembl:

ensembl_id ENSDART00000135649

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026461 lncRNA downstream 412674 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00027295 lncRNA downstream 701038 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA downstream 701116 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00027294 lncRNA downstream 871814 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027293 lncRNA downstream 1136617 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00026963 lncRNA upstream 140255 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA upstream 140255 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026498 lncRNA upstream 907682 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 919634 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00027296 lncRNA upstream 1526024 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00026469 mRNA downstream 151736 20859661 ~ 20869175 (-) True XLOC_013399
TCONS_00026466 mRNA downstream 198866 20726149 ~ 20822045 (-) False XLOC_013397
TCONS_00026467 mRNA downstream 204808 20730053 ~ 20816103 (-) True XLOC_013397
TCONS_00026465 mRNA downstream 346790 20642378 ~ 20674121 (-) True XLOC_013396
TCONS_00026463 mRNA downstream 384362 20613241 ~ 20636549 (-) True XLOC_013394
TCONS_00026473 mRNA upstream 52957 21077528 ~ 21097663 (-) True XLOC_013401
TCONS_00026474 mRNA upstream 77264 21101835 ~ 21105968 (-) True XLOC_013402
TCONS_00026475 mRNA upstream 140020 21164591 ~ 21170264 (-) False XLOC_013403
TCONS_00026476 mRNA upstream 146894 21171465 ~ 21177674 (-) True XLOC_013404
TCONS_00026477 mRNA upstream 154150 21178721 ~ 21188768 (-) True XLOC_013405
TCONS_00026468 other downstream 174598 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026464 other downstream 386988 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026460 other downstream 426669 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026456 other downstream 460921 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026448 other downstream 1478680 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026485 other upstream 687725 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026501 other upstream 1059201 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026504 other upstream 1526024 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026513 other upstream 1715161 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026516 other upstream 1834908 22859479 ~ 22862467 (-) True XLOC_013427

Expression Profile

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