RNA id: TCONS_00026962


Basic Information

Item Value
RNA id TCONS_00026962
length 865
lncRNA type sense_over
GC content 0.39
exon number 3
gene id XLOC_013403
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21164591 ~ 21170264 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGAACACATTGAAGATCTCTTATCCTCTGGAGTTAAGACAGGATCTGCAAGTACCCAGAAAAGATATAGTTGGCGAGGCCCTTCTTTCTCTTAAATACATGCCTACATCTCAGAGGCTGGAAGTGGGAGTGTTGAAGATCCACACAGTCTGCTATCATAATAAGACTGAAAGAGCTCTCTACGCCAGAACTATTGTGACCTGCAACCAGAGCAGACTTCGCCATCAGAGGACAACTCAGAAGAAACGCAGGGAGGTCACTGTGTTTAATGAGGTGATGACCTTTGTGTTGCCAGATCAACAAATTAAAGAGTGCTCCATAGAGGTGTCTGTTTACGAGATTCAGCCTTCAAAGAAGTCCTCCAAGAACCTGATTGGCCACATCCAagtaaaaaagaacaaaacaggTGAAAATGAGCACTGGAAGCAGATGATGCAATCATTAAGGCAACCAGTCGCAAATTGGCATTTAATCTACATCTGATGCACCTTATTGACGCTTCCCATCTCCCGAGGTGGAAGGTCATACTTCCGACTTTTGTTTGCGCTTTCAGGTTGGTTGGACTGAGGAAACAACATATCAAGAATAAATGGTGCtgagcttttttttgtttttgttttttttttgtatgcaagTTTTAACAGCTCTTGGTTTCCTGGACTCAAAAGATCTCATGTACGCtctctaatatttatttttaacaacaaaTATTACAGAGATGAAACATGTATATTTGTAACACGATAATGACAACGATGATGATTGCAATTAAACCACATCATAATAAATTGTGCTTGATATTACAGTATATTCTGTGGTGGAAATGacaagttataaaaaataaatttgcaatAGTGATAGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026461 lncRNA downstream 556589 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00027295 lncRNA downstream 844953 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA downstream 845031 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00027294 lncRNA downstream 1015729 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027293 lncRNA downstream 1280532 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00026498 lncRNA upstream 764135 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 776087 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00027296 lncRNA upstream 1382477 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00027297 lncRNA upstream 2018611 23186729 ~ 23188209 (-) False XLOC_013428
TCONS_00027298 lncRNA upstream 2018611 23186729 ~ 23188268 (-) False XLOC_013428
TCONS_00026474 mRNA downstream 58858 21101835 ~ 21105968 (-) True XLOC_013402
TCONS_00026473 mRNA downstream 67163 21077528 ~ 21097663 (-) True XLOC_013401
TCONS_00026470 mRNA downstream 117246 20881462 ~ 21047580 (-) False XLOC_013400
TCONS_00026471 mRNA downstream 117819 20882733 ~ 21047007 (-) False XLOC_013400
TCONS_00026469 mRNA downstream 295651 20859661 ~ 20869175 (-) True XLOC_013399
TCONS_00026476 mRNA upstream 3347 21171465 ~ 21177674 (-) True XLOC_013404
TCONS_00026477 mRNA upstream 10603 21178721 ~ 21188768 (-) True XLOC_013405
TCONS_00026478 mRNA upstream 30644 21198762 ~ 21218851 (-) True XLOC_013406
TCONS_00026479 mRNA upstream 89143 21257261 ~ 21271373 (-) False XLOC_013407
TCONS_00026480 mRNA upstream 95094 21263212 ~ 21267103 (-) True XLOC_013407
TCONS_00026472 other downstream 140255 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026468 other downstream 318513 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026464 other downstream 530903 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026460 other downstream 570584 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026456 other downstream 604836 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026485 other upstream 544178 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026501 other upstream 915654 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026504 other upstream 1382477 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026513 other upstream 1571614 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026516 other upstream 1691361 22859479 ~ 22862467 (-) True XLOC_013427

Expression Profile

//