RNA id: TCONS_00026480


Basic Information

Item Value
RNA id TCONS_00026480
length 491
RNA type mRNA
GC content 0.42
exon number 3
gene id XLOC_013407
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21257261 ~ 21271373 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGACATTAGCATGTGTTTGTGTCTAACAGAGAGATTCTGACAACTACAGTTTTCATAACCAAGTAACCTTCAGTCAGAAATTAAGTTCAATTGTGTGgaattgtatgtgtgtttttgactATTATGCAAAAACCAATACTTTGTTTTCATCTAGCTTCAGCTATGAGGAGTACAAAGAAACAGCTGACTGGCTGCTTGCTAATACAGATATCAGGCCCAAAGTGGCAATAATCTGTGGTTCGGGACTCGGCGGATTGGCTGACCTGCTGGACAACAAGCAAGTGTTTTCTTATGACAAAATCCCACGCTTTCCACACAGCACAGTGCAAGGACATAAAGGTCAGCTGGTGTTTGGAGAGCTGAAtgggaagcagtgtgtttgcatGCAAGGCCGTTTCCATTTTTATGAGGGCTATAATGTTGCTACGGTCACGTATCCAGTAAGAGTGTTTTTCCTTCTTGGAATTGAGACTTTGATTGTGACCAATGC

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016763 transferase activity, transferring pentosyl groups molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1800 Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm. Is expressed in pronephros; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in purine nucleoside phosphorylase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human PNP (purine nucleoside phosphorylase).

Ensembl:

ensembl_id ENSDART00000136285

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026963 lncRNA downstream 95094 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA downstream 95094 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026461 lncRNA downstream 654975 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00027295 lncRNA downstream 943339 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026498 lncRNA upstream 665150 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 677102 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00027296 lncRNA upstream 1283492 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00027297 lncRNA upstream 1919626 23186729 ~ 23188209 (-) False XLOC_013428
TCONS_00027298 lncRNA upstream 1919626 23186729 ~ 23188268 (-) False XLOC_013428
TCONS_00026478 mRNA downstream 44361 21198762 ~ 21218851 (-) True XLOC_013406
TCONS_00026477 mRNA downstream 74444 21178721 ~ 21188768 (-) True XLOC_013405
TCONS_00026476 mRNA downstream 85538 21171465 ~ 21177674 (-) True XLOC_013404
TCONS_00026475 mRNA downstream 92948 21164591 ~ 21170264 (-) False XLOC_013403
TCONS_00026474 mRNA downstream 157244 21101835 ~ 21105968 (-) True XLOC_013402
TCONS_00026481 mRNA upstream 355311 21622414 ~ 21640389 (-) True XLOC_013408
TCONS_00026482 mRNA upstream 378206 21645309 ~ 21685055 (-) True XLOC_013409
TCONS_00026483 mRNA upstream 419012 21686115 ~ 21725805 (-) False XLOC_013410
TCONS_00026484 mRNA upstream 421163 21688266 ~ 21725638 (-) True XLOC_013410
TCONS_00026486 mRNA upstream 461091 21728194 ~ 21748808 (-) False XLOC_013412
TCONS_00026472 other downstream 238641 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026468 other downstream 416899 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026464 other downstream 629289 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026460 other downstream 668970 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026456 other downstream 703222 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026485 other upstream 445193 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026501 other upstream 816669 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026504 other upstream 1283492 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026513 other upstream 1472629 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026516 other upstream 1592376 22859479 ~ 22862467 (-) True XLOC_013427

Expression Profile

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